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BioLiP
Download all results in tab-seperated text for 88 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3fby:A (3.15) BS01 CA ? GO:0005509 ... P49747 19276170
    2 3fby:A (3.15) BS02 CA ? GO:0005509 ... P49747 19276170
    3 3fby:A (3.15) BS03 CA ? GO:0005509 ... P49747 19276170
    4 3fby:A (3.15) BS04 CA ? GO:0005509 ... P49747 19276170
    5 3fby:A (3.15) BS05 CA ? GO:0005509 ... P49747 19276170
    6 3fby:A (3.15) BS06 CA ? GO:0005509 ... P49747 19276170
    7 3fby:A (3.15) BS07 CA ? GO:0005509 ... P49747 19276170
    8 3fby:A (3.15) BS08 CA ? GO:0005509 ... P49747 19276170
    9 3fby:A (3.15) BS09 CA ? GO:0005509 ... P49747 19276170
    10 3fby:A (3.15) BS10 CA ? GO:0005509 ... P49747 19276170
    11 3fby:A (3.15) BS11 CA ? GO:0005509 ... P49747 19276170
    12 3fby:A (3.15) BS12 CA ? GO:0005509 ... P49747 19276170
    13 3fby:A (3.15) BS13 CA ? GO:0005509 ... P49747 19276170
    14 3fby:A (3.15) BS14 CA ? GO:0005509 ... P49747 19276170
    15 3fby:A (3.15) BS15 CA ? GO:0005509 ... P49747 19276170
    16 3fby:A (3.15) BS16 CA ? GO:0005509 ... P49747 19276170
    17 3fby:A (3.15) BS17 CA ? GO:0005509 ... P49747 19276170
    18 3fby:A (3.15) BS18 CA ? GO:0005509 ... P49747 19276170
    19 3fby:A (3.15) BS19 CA ? GO:0005509 ... P49747 19276170
    20 3fby:A (3.15) BS20 CA ? GO:0005509 ... P49747 19276170
    21 3fby:A (3.15) BS21 CA ? GO:0005509 ... P49747 19276170
    22 3fby:A (3.15) BS22 CA ? GO:0005509 ... P49747 19276170
    23 3fby:A (3.15) BS23 CA ? GO:0005509 ... P49747 19276170
    24 3fby:A (3.15) BS24 CA ? GO:0005509 ... P49747 19276170
    25 3fby:A (3.15) BS25 CA ? GO:0005509 ... P49747 19276170
    26 3fby:A (3.15) BS26 CA ? GO:0005509 ... P49747 19276170
    27 3fby:A (3.15) BS27 CA ? GO:0005509 ... P49747 19276170
    28 3fby:A (3.15) BS28 CA ? GO:0005509 ... P49747 19276170
    29 3fby:A (3.15) BS29 CA ? GO:0005509 ... P49747 19276170
    30 3fby:A (3.15) BS30 CA ? GO:0005509 ... P49747 19276170
    31 3fby:B (3.15) BS01 CA ? GO:0005509 ... P49747 19276170
    32 3fby:B (3.15) BS02 CA ? GO:0005509 ... P49747 19276170
    33 3fby:B (3.15) BS03 CA ? GO:0005509 ... P49747 19276170
    34 3fby:B (3.15) BS04 CA ? GO:0005509 ... P49747 19276170
    35 3fby:B (3.15) BS05 CA ? GO:0005509 ... P49747 19276170
    36 3fby:B (3.15) BS06 CA ? GO:0005509 ... P49747 19276170
    37 3fby:B (3.15) BS07 CA ? GO:0005509 ... P49747 19276170
    38 3fby:B (3.15) BS08 CA ? GO:0005509 ... P49747 19276170
    39 3fby:B (3.15) BS09 CA ? GO:0005509 ... P49747 19276170
    40 3fby:B (3.15) BS10 CA ? GO:0005509 ... P49747 19276170
    41 3fby:B (3.15) BS11 CA ? GO:0005509 ... P49747 19276170
    42 3fby:B (3.15) BS12 CA ? GO:0005509 ... P49747 19276170
    43 3fby:B (3.15) BS13 CA ? GO:0005509 ... P49747 19276170
    44 3fby:B (3.15) BS14 CA ? GO:0005509 ... P49747 19276170
    45 3fby:B (3.15) BS15 CA ? GO:0005509 ... P49747 19276170
    46 3fby:B (3.15) BS16 CA ? GO:0005509 ... P49747 19276170
    47 3fby:B (3.15) BS17 CA ? GO:0005509 ... P49747 19276170
    48 3fby:B (3.15) BS18 CA ? GO:0005509 ... P49747 19276170
    49 3fby:B (3.15) BS19 CA ? GO:0005509 ... P49747 19276170
    50 3fby:B (3.15) BS20 CA ? GO:0005509 ... P49747 19276170
    51 3fby:B (3.15) BS21 CA ? GO:0005509 ... P49747 19276170
    52 3fby:B (3.15) BS22 CA ? GO:0005509 ... P49747 19276170
    53 3fby:B (3.15) BS23 CA ? GO:0005509 ... P49747 19276170
    54 3fby:B (3.15) BS24 CA ? GO:0005509 ... P49747 19276170
    55 3fby:B (3.15) BS25 CA ? GO:0005509 ... P49747 19276170
    56 3fby:B (3.15) BS26 CA ? GO:0005509 ... P49747 19276170
    57 3fby:B (3.15) BS27 CA ? GO:0005509 ... P49747 19276170
    58 3fby:B (3.15) BS28 CA ? GO:0005509 ... P49747 19276170
    59 3fby:B (3.15) BS29 CA ? GO:0005509 ... P49747 19276170
    60 3fby:C (3.15) BS01 CA ? GO:0005509 ... P49747 19276170
    61 3fby:C (3.15) BS02 CA ? GO:0005509 ... P49747 19276170
    62 3fby:C (3.15) BS03 CA ? GO:0005509 ... P49747 19276170
    63 3fby:C (3.15) BS04 CA ? GO:0005509 ... P49747 19276170
    64 3fby:C (3.15) BS05 CA ? GO:0005509 ... P49747 19276170
    65 3fby:C (3.15) BS06 CA ? GO:0005509 ... P49747 19276170
    66 3fby:C (3.15) BS07 CA ? GO:0005509 ... P49747 19276170
    67 3fby:C (3.15) BS08 CA ? GO:0005509 ... P49747 19276170
    68 3fby:C (3.15) BS09 CA ? GO:0005509 ... P49747 19276170
    69 3fby:C (3.15) BS10 CA ? GO:0005509 ... P49747 19276170
    70 3fby:C (3.15) BS11 CA ? GO:0005509 ... P49747 19276170
    71 3fby:C (3.15) BS12 CA ? GO:0005509 ... P49747 19276170
    72 3fby:C (3.15) BS13 CA ? GO:0005509 ... P49747 19276170
    73 3fby:C (3.15) BS14 CA ? GO:0005509 ... P49747 19276170
    74 3fby:C (3.15) BS15 CA ? GO:0005509 ... P49747 19276170
    75 3fby:C (3.15) BS16 CA ? GO:0005509 ... P49747 19276170
    76 3fby:C (3.15) BS17 CA ? GO:0005509 ... P49747 19276170
    77 3fby:C (3.15) BS18 CA ? GO:0005509 ... P49747 19276170
    78 3fby:C (3.15) BS19 CA ? GO:0005509 ... P49747 19276170
    79 3fby:C (3.15) BS20 CA ? GO:0005509 ... P49747 19276170
    80 3fby:C (3.15) BS21 CA ? GO:0005509 ... P49747 19276170
    81 3fby:C (3.15) BS22 CA ? GO:0005509 ... P49747 19276170
    82 3fby:C (3.15) BS23 CA ? GO:0005509 ... P49747 19276170
    83 3fby:C (3.15) BS24 CA ? GO:0005509 ... P49747 19276170
    84 3fby:C (3.15) BS25 CA ? GO:0005509 ... P49747 19276170
    85 3fby:C (3.15) BS26 CA ? GO:0005509 ... P49747 19276170
    86 3fby:C (3.15) BS27 CA ? GO:0005509 ... P49747 19276170
    87 3fby:C (3.15) BS28 CA ? GO:0005509 ... P49747 19276170
    88 3fby:C (3.15) BS29 CA ? GO:0005509 ... P49747 19276170
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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