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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ias:1 (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    2 3ias:1 (3.15) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 19635800
    3 3ias:2 (3.15) BS01 FES 7.1.1.- GO:0003954 ... Q56221 19635800
    4 3ias:3 (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    5 3ias:3 (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    6 3ias:3 (3.15) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    7 3ias:3 (3.15) BS04 FES 7.1.1.- GO:0003954 ... Q56223 19635800
    8 3ias:3 (3.15) BS05 CA 7.1.1.- GO:0003954 ... Q56223 19635800
    9 3ias:4 (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    10 3ias:6 (3.15) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    11 3ias:9 (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    12 3ias:9 (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    13 3ias:A (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    14 3ias:A (3.15) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 19635800
    15 3ias:B (3.15) BS01 FES 7.1.1.- GO:0003954 ... Q56221 19635800
    16 3ias:C (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    17 3ias:C (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    18 3ias:C (3.15) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    19 3ias:C (3.15) BS04 FES 7.1.1.- GO:0003954 ... Q56223 19635800
    20 3ias:C (3.15) BS05 CA 7.1.1.- GO:0003954 ... Q56223 19635800
    21 3ias:D (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    22 3ias:F (3.15) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    23 3ias:G (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    24 3ias:G (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    25 3ias:J (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    26 3ias:J (3.15) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 19635800
    27 3ias:K (3.15) BS01 FES 7.1.1.- GO:0003954 ... Q56221 19635800
    28 3ias:L (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    29 3ias:L (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    30 3ias:L (3.15) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    31 3ias:L (3.15) BS04 FES 7.1.1.- GO:0003954 ... Q56223 19635800
    32 3ias:L (3.15) BS05 CA 7.1.1.- GO:0003954 ... Q56223 19635800
    33 3ias:M (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    34 3ias:O (3.15) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    35 3ias:P (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    36 3ias:P (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    37 3ias:S (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 19635800
    38 3ias:S (3.15) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 19635800
    39 3ias:T (3.15) BS01 FES 7.1.1.- GO:0003954 ... Q56221 19635800
    40 3ias:U (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    41 3ias:U (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    42 3ias:U (3.15) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 19635800
    43 3ias:U (3.15) BS04 FES 7.1.1.- GO:0003954 ... Q56223 19635800
    44 3ias:U (3.15) BS05 CA 7.1.1.- GO:0003954 ... Q56223 19635800
    45 3ias:V (3.15) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 19635800
    46 3ias:X (3.15) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 19635800
    47 3ias:Y (3.15) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    48 3ias:Y (3.15) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 19635800
    49 3ias:Z (3.15) BS01 CA 7.1.1.- GO:0005886 ... Q5SKZ7 19635800
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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