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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j7y:0 (3.4) BS01 rna ? GO:0003723 ... Q9BYC8 25278503
    2 3j7y:0 (3.4) BS02 ZN ? GO:0003723 ... Q9BYC8 25278503
    3 3j7y:1 (3.4) BS01 rna ? GO:0003735 ... O75394 25278503
    4 3j7y:2 (3.4) BS01 rna ? GO:0003735 ... Q9BQ48 25278503
    5 3j7y:3 (3.4) BS01 rna ? GO:0003735 ... Q9NZE8 25278503
    6 3j7y:4 (3.4) BS01 rna ? GO:0003735 ... Q9P0J6 25278503
    7 3j7y:4 (3.4) BS02 ZN ? GO:0003735 ... Q9P0J6 25278503
    8 3j7y:5 (3.4) BS01 rna ? GO:0003723 ... Q9BZE1 25278503
    9 3j7y:6 (3.4) BS01 rna ? GO:0005515 ... Q96DV4 25278503
    10 3j7y:6 (3.4) BS02 rna ? GO:0005515 ... Q96DV4 25278503
    11 3j7y:8 (3.4) BS01 rna ? GO:0003723 ... Q9NQ50 25278503
    12 3j7y:9 (3.4) BS01 rna ? GO:0003723 ... Q8IXM3 25278503
    13 3j7y:D (3.4) BS01 rna ? GO:0002181 ... Q5T653 25278503
    14 3j7y:E (3.4) BS01 rna ? GO:0003723 ... P09001 25278503
    15 3j7y:F (3.4) BS01 rna ? GO:0003723 ... Q9BYD3 25278503
    16 3j7y:H (3.4) BS01 rna ? GO:0003723 ... Q9BYD2 25278503
    17 3j7y:I (3.4) BS01 rna ? GO:0003723 ... Q7Z7H8 25278503
    18 3j7y:J (3.4) BS01 rna ? GO:0003723 ... Q9Y3B7 25278503
    19 3j7y:K (3.4) BS01 rna ? GO:0003723 ... Q9BYD1 25278503
    20 3j7y:L (3.4) BS01 rna ? GO:0003723 ... Q6P1L8 25278503
    21 3j7y:M (3.4) BS01 rna ? GO:0003723 ... Q9P015 25278503
    22 3j7y:N (3.4) BS01 rna ? GO:0003735 ... Q9NX20 25278503
    23 3j7y:O (3.4) BS01 rna ? GO:0003735 ... Q9NRX2 25278503
    24 3j7y:P (3.4) BS01 rna ? GO:0003723 ... Q9H0U6 25278503
    25 3j7y:P (3.4) BS02 rna ? GO:0003723 ... Q9H0U6 25278503
    26 3j7y:Q (3.4) BS01 rna ? GO:0003735 ... P49406 25278503
    27 3j7y:R (3.4) BS01 rna ? GO:0003723 ... Q9BYC9 25278503
    28 3j7y:S (3.4) BS01 rna ? GO:0003723 ... Q7Z2W9 25278503
    29 3j7y:T (3.4) BS01 rna ? GO:0003735 ... Q9NWU5 25278503
    30 3j7y:U (3.4) BS01 rna ? GO:0001650 ... Q16540 25278503
    31 3j7y:V (3.4) BS01 rna ? GO:0003723 ... Q96A35 25278503
    32 3j7y:W (3.4) BS01 rna ? GO:0003723 ... Q9P0M9 25278503
    33 3j7y:X (3.4) BS01 rna ? GO:0003723 ... Q13084 25278503
    34 3j7y:Y (3.4) BS01 rna ? GO:0003674 ... Q9HD33 25278503
    35 3j7y:Z (3.4) BS01 rna ? GO:0003735 ... Q8TCC3 25278503
    36 3j7y:a (3.4) BS01 rna ? GO:0003723 ... Q9Y6G3 25278503
    37 3j7y:b (3.4) BS01 rna ? GO:0003735 ... Q8N983 25278503
    38 3j7y:c (3.4) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 25278503
    39 3j7y:e (3.4) BS01 rna ? GO:0003674 ... Q9H2W6 25278503
    40 3j7y:f (3.4) BS01 rna ? GO:0005515 ... Q96GC5 25278503
    41 3j7y:f (3.4) BS02 rna ? GO:0005515 ... Q96GC5 25278503
    42 3j7y:g (3.4) BS01 rna ? GO:0003735 ... Q13405 25278503
    43 3j7y:i (3.4) BS01 rna ? GO:0003735 ... Q4U2R6 25278503
    44 3j7y:j (3.4) BS01 rna ? GO:0003735 ... Q86TS9 25278503
    45 3j7y:o (3.4) BS01 rna ? GO:0003735 ... Q9BQC6 25278503
    46 3j7y:r (3.4) BS01 rna ? GO:0003735 ... Q9NVS2 25278503
    47 3j7y:s (3.4) BS01 rna ? GO:0003723 ... Q9NP92 25278503
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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