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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3lm1:A (2.1) BS01 peptide ? GO:0030246 ... P18674 20826825
    2 3lm1:A (2.1) BS02 peptide ? GO:0030246 ... P18674 20826825
    3 3lm1:A (2.1) BS03 peptide ? GO:0030246 ... P18674 20826825
    4 3lm1:A (2.1) BS04 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    5 3lm1:C (2.1) BS01 peptide ? GO:0030246 ... P18674 20826825
    6 3lm1:C (2.1) BS02 peptide ? GO:0030246 ... P18674 20826825
    7 3lm1:C (2.1) BS03 peptide ? GO:0030246 ... P18674 20826825
    8 3lm1:C (2.1) BS04 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    9 3lm1:C (2.1) BS05 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    10 3lm1:E (2.1) BS01 peptide ? GO:0030246 ... P18674 20826825
    11 3lm1:E (2.1) BS02 peptide ? GO:0030246 ... P18674 20826825
    12 3lm1:E (2.1) BS03 peptide ? GO:0030246 ... P18674 20826825
    13 3lm1:E (2.1) BS04 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    14 3lm1:E (2.1) BS05 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    15 3lm1:G (2.1) BS01 peptide ? GO:0030246 ... P18674 20826825
    16 3lm1:G (2.1) BS02 peptide ? GO:0030246 ... P18674 20826825
    17 3lm1:G (2.1) BS03 peptide ? GO:0030246 ... P18674 20826825
    18 3lm1:G (2.1) BS04 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    19 3lm1:I (2.1) BS01 peptide ? GO:0030246 ... P18674 20826825
    20 3lm1:I (2.1) BS02 peptide ? GO:0030246 ... P18674 20826825
    21 3lm1:I (2.1) BS03 peptide ? GO:0030246 ... P18674 20826825
    22 3lm1:I (2.1) BS04 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    23 3lm1:K (2.1) BS01 peptide ? GO:0030246 ... P18674 20826825
    24 3lm1:K (2.1) BS02 peptide ? GO:0030246 ... P18674 20826825
    25 3lm1:K (2.1) BS03 peptide ? GO:0030246 ... P18674 20826825
    26 3lm1:K (2.1) BS04 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    27 3lm1:M (2.1) BS01 peptide ? GO:0030246 ... P18674 20826825
    28 3lm1:M (2.1) BS02 peptide ? GO:0030246 ... P18674 20826825
    29 3lm1:M (2.1) BS03 peptide ? GO:0030246 ... P18674 20826825
    30 3lm1:M (2.1) BS04 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    31 3lm1:O (2.1) BS01 peptide ? GO:0030246 ... P18674 20826825
    32 3lm1:O (2.1) BS02 peptide ? GO:0030246 ... P18674 20826825
    33 3lm1:O (2.1) BS03 peptide ? GO:0030246 ... P18674 20826825
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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