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BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3q08:A (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    2 3q08:A (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    3 3q08:B (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    4 3q08:B (3.05) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5 3q08:B (3.05) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    6 3q08:C (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    7 3q08:C (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    8 3q08:D (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    9 3q08:D (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    10 3q08:E (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    11 3q08:E (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    12 3q08:F (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    13 3q08:F (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    14 3q08:G (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    15 3q08:G (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    16 3q08:H (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    17 3q08:H (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    18 3q08:I (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    19 3q08:I (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    20 3q08:J (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    21 3q08:J (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    22 3q08:K (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    23 3q08:K (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    24 3q08:L (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    25 3q08:L (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    26 3q08:M (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    27 3q08:M (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    28 3q08:N (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    29 3q08:N (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    30 3q08:O (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    31 3q08:O (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    32 3q08:P (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    33 3q08:P (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    34 3q08:Q (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    35 3q08:Q (3.05) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    36 3q08:Q (3.05) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    37 3q08:R (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    38 3q08:R (3.05) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    39 3q08:R (3.05) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    40 3q08:S (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    41 3q08:S (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    42 3q08:T (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    43 3q08:T (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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