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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3q09:A (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    2 3q09:A (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    3 3q09:A (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    4 3q09:B (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    5 3q09:B (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    6 3q09:B (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    7 3q09:C (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    8 3q09:C (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    9 3q09:D (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    10 3q09:D (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    11 3q09:E (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    12 3q09:E (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    13 3q09:F (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    14 3q09:F (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    15 3q09:G (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    16 3q09:G (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    17 3q09:H (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    18 3q09:H (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    19 3q09:I (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    20 3q09:I (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    21 3q09:J (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    22 3q09:J (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    23 3q09:K (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    24 3q09:K (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    25 3q09:L (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    26 3q09:L (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    27 3q09:M (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    28 3q09:M (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    29 3q09:N (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    30 3q09:N (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    31 3q09:O (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    32 3q09:O (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    33 3q09:O (3.0) BS03 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    34 3q09:P (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    35 3q09:P (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    36 3q09:Q (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    37 3q09:Q (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    38 3q09:Q (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    39 3q09:R (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    40 3q09:R (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    41 3q09:R (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    42 3q09:S (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    43 3q09:S (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    44 3q09:S (3.0) BS03 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    45 3q09:T (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    46 3q09:T (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    47 3q09:T (3.0) BS03 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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