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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3qvd:A (2.0) BS01 PEO ? GO:0005506 ... Q9UWP7 21647777
    2 3qvd:A (2.0) BS02 FE2 ? GO:0005506 ... Q9UWP7 21647777
    3 3qvd:A (2.0) BS03 FE2 ? GO:0005506 ... Q9UWP7 21647777
    4 3qvd:A (2.0) BS04 FE2 ? GO:0005506 ... Q9UWP7 21647777
    5 3qvd:A (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    6 3qvd:B (2.0) BS01 PEO ? GO:0005506 ... Q9UWP7 21647777
    7 3qvd:B (2.0) BS02 FE ? GO:0005506 ... Q9UWP7 21647777
    8 3qvd:B (2.0) BS03 FE2 ? GO:0005506 ... Q9UWP7 21647777
    9 3qvd:B (2.0) BS04 FE2 ? GO:0005506 ... Q9UWP7 21647777
    10 3qvd:B (2.0) BS05 FE2 ? GO:0005506 ... Q9UWP7 21647777
    11 3qvd:C (2.0) BS01 PEO ? GO:0005506 ... Q9UWP7 21647777
    12 3qvd:C (2.0) BS02 FE2 ? GO:0005506 ... Q9UWP7 21647777
    13 3qvd:C (2.0) BS03 FE2 ? GO:0005506 ... Q9UWP7 21647777
    14 3qvd:C (2.0) BS04 FE2 ? GO:0005506 ... Q9UWP7 21647777
    15 3qvd:C (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    16 3qvd:D (2.0) BS01 PEO ? GO:0005506 ... Q9UWP7 21647777
    17 3qvd:D (2.0) BS02 FE2 ? GO:0005506 ... Q9UWP7 21647777
    18 3qvd:D (2.0) BS03 FE2 ? GO:0005506 ... Q9UWP7 21647777
    19 3qvd:D (2.0) BS04 FE2 ? GO:0005506 ... Q9UWP7 21647777
    20 3qvd:D (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    21 3qvd:E (2.0) BS01 PEO ? GO:0005506 ... Q9UWP7 21647777
    22 3qvd:E (2.0) BS02 FE2 ? GO:0005506 ... Q9UWP7 21647777
    23 3qvd:E (2.0) BS03 FE2 ? GO:0005506 ... Q9UWP7 21647777
    24 3qvd:E (2.0) BS04 FE2 ? GO:0005506 ... Q9UWP7 21647777
    25 3qvd:E (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    26 3qvd:F (2.0) BS01 PEO ? GO:0005506 ... Q9UWP7 21647777
    27 3qvd:F (2.0) BS02 FE2 ? GO:0005506 ... Q9UWP7 21647777
    28 3qvd:F (2.0) BS03 FE2 ? GO:0005506 ... Q9UWP7 21647777
    29 3qvd:F (2.0) BS04 FE2 ? GO:0005506 ... Q9UWP7 21647777
    30 3qvd:F (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    31 3qvd:G (2.0) BS01 PEO ? GO:0005506 ... Q9UWP7 21647777
    32 3qvd:G (2.0) BS02 FE2 ? GO:0005506 ... Q9UWP7 21647777
    33 3qvd:G (2.0) BS03 FE2 ? GO:0005506 ... Q9UWP7 21647777
    34 3qvd:G (2.0) BS04 FE2 ? GO:0005506 ... Q9UWP7 21647777
    35 3qvd:G (2.0) BS05 FE ? GO:0005506 ... Q9UWP7 21647777
    36 3qvd:H (2.0) BS01 PEO ? GO:0005506 ... Q9UWP7 21647777
    37 3qvd:H (2.0) BS02 FE ? GO:0005506 ... Q9UWP7 21647777
    38 3qvd:H (2.0) BS03 FE2 ? GO:0005506 ... Q9UWP7 21647777
    39 3qvd:H (2.0) BS04 FE2 ? GO:0005506 ... Q9UWP7 21647777
    40 3qvd:H (2.0) BS05 FE2 ? GO:0005506 ... Q9UWP7 21647777
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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