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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3rg1:A (2.91) BS01 MAN ? GO:0005615 ... A6QNK7 21857663
    2 3rg1:C (2.91) BS01 MAN ? GO:0006955 ... A4IFT3 21857663
    3 3rg1:D (2.91) BS01 BMA ? GO:0006955 ... A4IFT3 21857663
    4 3rg1:D (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    5 3rg1:D (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    6 3rg1:D (2.91) BS04 MAN ? GO:0006955 ... A4IFT3 21857663
    7 3rg1:E (2.91) BS01 MAN ? GO:0005615 ... A6QNK7 21857663
    8 3rg1:H (2.91) BS01 BMA ? GO:0006955 ... A4IFT3 21857663
    9 3rg1:H (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    10 3rg1:H (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    11 3rg1:I (2.91) BS01 MAN ? GO:0005615 ... A6QNK7 21857663
    12 3rg1:J (2.91) BS01 MAN ? GO:0005615 ... A6QNK7 21857663
    13 3rg1:L (2.91) BS01 BMA ? GO:0006955 ... A4IFT3 21857663
    14 3rg1:L (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    15 3rg1:L (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    16 3rg1:L (2.91) BS04 MAN ? GO:0006955 ... A4IFT3 21857663
    17 3rg1:M (2.91) BS01 MAN ? GO:0005615 ... A6QNK7 21857663
    18 3rg1:N (2.91) BS01 MAN ? GO:0005615 ... A6QNK7 21857663
    19 3rg1:O (2.91) BS01 MAN ? GO:0006955 ... A4IFT3 21857663
    20 3rg1:O (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    21 3rg1:O (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    22 3rg1:P (2.91) BS01 MAN ? GO:0006955 ... A4IFT3 21857663
    23 3rg1:P (2.91) BS02 MAN ? GO:0006955 ... A4IFT3 21857663
    24 3rg1:P (2.91) BS03 MAN ? GO:0006955 ... A4IFT3 21857663
    25 3rg1:P (2.91) BS04 MAN ? GO:0006955 ... A4IFT3 21857663
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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