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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3uom:A (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    2 3uom:A (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    3 3uom:A (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    4 3uom:A (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    5 3uom:A (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    6 3uom:A (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    7 3uom:A (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    8 3uom:A (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    9 3uom:A (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    10 3uom:A (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    11 3uom:B (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    12 3uom:B (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    13 3uom:B (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    14 3uom:B (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    15 3uom:B (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    16 3uom:B (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    17 3uom:B (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    18 3uom:B (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    19 3uom:B (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    20 3uom:B (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    21 3uom:B (2.02) BS11 CA ? GO:0005509 ... P31415 22337878
    22 3uom:B (2.02) BS12 CA ? GO:0005509 ... P31415 22337878
    23 3uom:C (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    24 3uom:C (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    25 3uom:C (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    26 3uom:C (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    27 3uom:C (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    28 3uom:C (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    29 3uom:C (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    30 3uom:C (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    31 3uom:C (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    32 3uom:C (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    33 3uom:D (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    34 3uom:D (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    35 3uom:D (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    36 3uom:D (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    37 3uom:D (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    38 3uom:D (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    39 3uom:D (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    40 3uom:D (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    41 3uom:D (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    42 3uom:D (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    43 3uom:E (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    44 3uom:E (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    45 3uom:E (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    46 3uom:E (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    47 3uom:E (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    48 3uom:E (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    49 3uom:E (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    50 3uom:E (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    51 3uom:E (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    52 3uom:E (2.02) BS10 CA ? GO:0005509 ... P31415 22337878
    53 3uom:E (2.02) BS11 CA ? GO:0005509 ... P31415 22337878
    54 3uom:F (2.02) BS01 CA ? GO:0005509 ... P31415 22337878
    55 3uom:F (2.02) BS02 CA ? GO:0005509 ... P31415 22337878
    56 3uom:F (2.02) BS03 CA ? GO:0005509 ... P31415 22337878
    57 3uom:F (2.02) BS04 CA ? GO:0005509 ... P31415 22337878
    58 3uom:F (2.02) BS05 CA ? GO:0005509 ... P31415 22337878
    59 3uom:F (2.02) BS06 CA ? GO:0005509 ... P31415 22337878
    60 3uom:F (2.02) BS07 CA ? GO:0005509 ... P31415 22337878
    61 3uom:F (2.02) BS08 CA ? GO:0005509 ... P31415 22337878
    62 3uom:F (2.02) BS09 CA ? GO:0005509 ... P31415 22337878
    63 3uom:F (2.02) BS10 CA ? GO:0005509 ... P31415 22337878

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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