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BioLiP
Download all results in tab-seperated text for 155 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3wmm:0 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    2 3wmm:0 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    3 3wmm:0 (3.008) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    4 3wmm:1 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    5 3wmm:1 (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    6 3wmm:1 (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    7 3wmm:1 (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    8 3wmm:1 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    9 3wmm:1 (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    10 3wmm:2 (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    11 3wmm:2 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    12 3wmm:2 (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    13 3wmm:3 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    14 3wmm:3 (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    15 3wmm:3 (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    16 3wmm:3 (3.008) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    17 3wmm:3 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    18 3wmm:3 (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    19 3wmm:4 (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    20 3wmm:4 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    21 3wmm:4 (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    22 3wmm:5 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    23 3wmm:5 (3.008) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    24 3wmm:5 (3.008) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    25 3wmm:5 (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    26 3wmm:5 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    27 3wmm:6 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    28 3wmm:6 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    29 3wmm:6 (3.008) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    30 3wmm:6 (3.008) BS04 CA ? GO:0005515 ... D2Z0P1 24670637
    31 3wmm:7 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    32 3wmm:7 (3.008) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    33 3wmm:7 (3.008) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    34 3wmm:7 (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    35 3wmm:7 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    36 3wmm:7 (3.008) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    37 3wmm:8 (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    38 3wmm:8 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    39 3wmm:8 (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    40 3wmm:9 (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    41 3wmm:9 (3.008) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    42 3wmm:9 (3.008) BS03 CRT ? GO:0005515 ... D2Z0P2 24670637
    43 3wmm:9 (3.008) BS04 CA ? GO:0005515 ... D2Z0P2 24670637
    44 3wmm:9 (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    45 3wmm:9 (3.008) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    46 3wmm:A (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    47 3wmm:A (3.008) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    48 3wmm:A (3.008) BS03 CRT ? GO:0005515 ... D2Z0P2 24670637
    49 3wmm:A (3.008) BS04 CA ? GO:0005515 ... D2Z0P2 24670637
    50 3wmm:A (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    51 3wmm:A (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    52 3wmm:B (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    53 3wmm:B (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    54 3wmm:B (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    55 3wmm:C (3.008) BS01 HEM ? GO:0005506 ... D2Z0P5 24670637
    56 3wmm:C (3.008) BS02 HEM ? GO:0005506 ... D2Z0P5 24670637
    57 3wmm:C (3.008) BS03 HEM ? GO:0005506 ... D2Z0P5 24670637
    58 3wmm:C (3.008) BS04 HEM ? GO:0005506 ... D2Z0P5 24670637
    59 3wmm:C (3.008) BS05 CA ? GO:0005506 ... D2Z0P5 24670637
    60 3wmm:D (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    61 3wmm:D (3.008) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    62 3wmm:D (3.008) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    63 3wmm:D (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    64 3wmm:D (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    65 3wmm:E (3.008) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    66 3wmm:E (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    67 3wmm:E (3.008) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    68 3wmm:F (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    69 3wmm:F (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    70 3wmm:F (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    71 3wmm:F (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    72 3wmm:F (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    73 3wmm:G (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    74 3wmm:G (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    75 3wmm:G (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    76 3wmm:I (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    77 3wmm:I (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    78 3wmm:I (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    79 3wmm:I (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    80 3wmm:I (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    81 3wmm:I (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    82 3wmm:J (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    83 3wmm:J (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    84 3wmm:J (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    85 3wmm:K (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    86 3wmm:K (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    87 3wmm:K (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    88 3wmm:K (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    89 3wmm:K (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    90 3wmm:K (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    91 3wmm:L (3.008) BS01 BCL ? GO:0005515 ... D2Z0P3 24670637
    92 3wmm:L (3.008) BS02 BPH ? GO:0005515 ... D2Z0P3 24670637
    93 3wmm:L (3.008) BS03 UQ8 ? GO:0005515 ... D2Z0P3 24670637
    94 3wmm:L (3.008) BS04 BCL ? GO:0005515 ... D2Z0P3 24670637
    95 3wmm:L (3.008) BS05 BCL ? GO:0005515 ... D2Z0P3 24670637
    96 3wmm:L (3.008) BS06 BPH ? GO:0005515 ... D2Z0P3 24670637
    97 3wmm:L (3.008) BS07 FE ? GO:0005515 ... D2Z0P3 24670637
    98 3wmm:M (3.008) BS01 BPH ? GO:0005515 ... A8ASG6 24670637
    99 3wmm:M (3.008) BS02 BCL ? GO:0005515 ... A8ASG6 24670637
    100 3wmm:M (3.008) BS03 BCL ? GO:0005515 ... A8ASG6 24670637
    101 3wmm:M (3.008) BS04 BCL ? GO:0005515 ... A8ASG6 24670637
    102 3wmm:M (3.008) BS05 BPH ? GO:0005515 ... A8ASG6 24670637
    103 3wmm:M (3.008) BS06 FE ? GO:0005515 ... A8ASG6 24670637
    104 3wmm:M (3.008) BS07 MQ8 ? GO:0005515 ... A8ASG6 24670637
    105 3wmm:M (3.008) BS08 CRT ? GO:0005515 ... A8ASG6 24670637
    106 3wmm:M (3.008) BS09 PGW ? GO:0005515 ... A8ASG6 24670637
    107 3wmm:N (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    108 3wmm:N (3.008) BS02 CRT ? GO:0005515 ... D2Z0P1 24670637
    109 3wmm:O (3.008) BS01 CA ? GO:0005515 ... D2Z0P2 24670637
    110 3wmm:O (3.008) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    111 3wmm:O (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    112 3wmm:O (3.008) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    113 3wmm:P (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    114 3wmm:P (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    115 3wmm:P (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    116 3wmm:Q (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    117 3wmm:Q (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    118 3wmm:Q (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    119 3wmm:Q (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    120 3wmm:Q (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    121 3wmm:R (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    122 3wmm:R (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    123 3wmm:R (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    124 3wmm:S (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    125 3wmm:S (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    126 3wmm:S (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    127 3wmm:S (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    128 3wmm:S (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    129 3wmm:S (3.008) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    130 3wmm:T (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    131 3wmm:T (3.008) BS02 CRT ? GO:0005515 ... D2Z0P1 24670637
    132 3wmm:U (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    133 3wmm:U (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    134 3wmm:U (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    135 3wmm:U (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    136 3wmm:U (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    137 3wmm:V (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    138 3wmm:V (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    139 3wmm:V (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    140 3wmm:W (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    141 3wmm:W (3.008) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    142 3wmm:W (3.008) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    143 3wmm:W (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    144 3wmm:W (3.008) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    145 3wmm:X (3.008) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    146 3wmm:X (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    147 3wmm:X (3.008) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    148 3wmm:Y (3.008) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    149 3wmm:Y (3.008) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    150 3wmm:Y (3.008) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    151 3wmm:Y (3.008) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    152 3wmm:Y (3.008) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    153 3wmm:Z (3.008) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    154 3wmm:Z (3.008) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    155 3wmm:Z (3.008) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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