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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4dug:A (3.292) BS01 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    2 4dug:A (3.292) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    3 4dug:A (3.292) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    4 4dug:A (3.292) BS04 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    5 4dug:A (3.292) BS05 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    6 4dug:A (3.292) BS06 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    7 4dug:B (3.292) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    8 4dug:B (3.292) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    9 4dug:B (3.292) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    10 4dug:B (3.292) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    11 4dug:C (3.292) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    12 4dug:C (3.292) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    13 4dug:C (3.292) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    14 4dug:C (3.292) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    15 4dug:C (3.292) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    16 4dug:D (3.292) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    17 4dug:D (3.292) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    18 4dug:D (3.292) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    19 4dug:D (3.292) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    20 4dug:E (3.292) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    21 4dug:E (3.292) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    22 4dug:E (3.292) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    23 4dug:E (3.292) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    24 4dug:E (3.292) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    25 4dug:F (3.292) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    26 4dug:F (3.292) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    27 4dug:F (3.292) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    28 4dug:F (3.292) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    29 4dug:F (3.292) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 22304631
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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