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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4dv1:B (3.849) BS01 rna ? GO:0003735 ... P80371 N/A
    2 4dv1:C (3.849) BS01 rna ? GO:0003676 ... P80372 N/A
    3 4dv1:D (3.849) BS01 rna ? GO:0003723 ... P80373 N/A
    4 4dv1:E (3.849) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    5 4dv1:F (3.849) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    6 4dv1:G (3.849) BS01 rna ? GO:0000028 ... P17291 N/A
    7 4dv1:H (3.849) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    8 4dv1:I (3.849) BS01 rna ? GO:0000049 ... P80374 N/A
    9 4dv1:J (3.849) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    10 4dv1:J (3.849) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    11 4dv1:K (3.849) BS01 rna ? GO:0003735 ... P80376 N/A
    12 4dv1:K (3.849) BS02 MG ? GO:0003735 ... P80376 N/A
    13 4dv1:K (3.849) BS03 MG ? GO:0003735 ... P80376 N/A
    14 4dv1:L (3.849) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    15 4dv1:L (3.849) BS02 SRY ? GO:0000049 ... Q5SHN3 N/A
    16 4dv1:L (3.849) BS03 MG ? GO:0000049 ... Q5SHN3 N/A
    17 4dv1:M (3.849) BS01 rna ? GO:0000049 ... P80377 N/A
    18 4dv1:N (3.849) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    19 4dv1:N (3.849) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    20 4dv1:N (3.849) BS03 MG ? GO:0003735 ... P0DOY6 N/A
    21 4dv1:O (3.849) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    22 4dv1:P (3.849) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    23 4dv1:Q (3.849) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    24 4dv1:R (3.849) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    25 4dv1:S (3.849) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    26 4dv1:S (3.849) BS02 MG ? GO:0000028 ... Q5SHP2 N/A
    27 4dv1:T (3.849) BS01 rna ? GO:0003723 ... P80380 N/A
    28 4dv1:T (3.849) BS02 MG ? GO:0003723 ... P80380 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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