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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ire:A (3.19) BS01 LMD ? GO:0004888 ... Q7NDN8 23667707
    2 4ire:A (3.19) BS02 OXL ? GO:0004888 ... Q7NDN8 23667707
    3 4ire:A (3.19) BS03 OXL ? GO:0004888 ... Q7NDN8 23667707
    4 4ire:A (3.19) BS04 OXL ? GO:0004888 ... Q7NDN8 23667707
    5 4ire:A (3.19) BS05 LMD ? GO:0004888 ... Q7NDN8 23667707
    6 4ire:B (3.19) BS01 LMD ? GO:0004888 ... Q7NDN8 23667707
    7 4ire:B (3.19) BS02 OXL ? GO:0004888 ... Q7NDN8 23667707
    8 4ire:B (3.19) BS03 OXL ? GO:0004888 ... Q7NDN8 23667707
    9 4ire:B (3.19) BS04 LMD ? GO:0004888 ... Q7NDN8 23667707
    10 4ire:C (3.19) BS01 LMD ? GO:0004888 ... Q7NDN8 23667707
    11 4ire:C (3.19) BS02 LMD ? GO:0004888 ... Q7NDN8 23667707
    12 4ire:C (3.19) BS03 OXL ? GO:0004888 ... Q7NDN8 23667707
    13 4ire:C (3.19) BS04 OXL ? GO:0004888 ... Q7NDN8 23667707
    14 4ire:D (3.19) BS01 OXL ? GO:0004888 ... Q7NDN8 23667707
    15 4ire:D (3.19) BS02 OXL ? GO:0004888 ... Q7NDN8 23667707
    16 4ire:D (3.19) BS03 OXL ? GO:0004888 ... Q7NDN8 23667707
    17 4ire:D (3.19) BS04 OXL ? GO:0004888 ... Q7NDN8 23667707
    18 4ire:D (3.19) BS05 LMD ? GO:0004888 ... Q7NDN8 23667707
    19 4ire:D (3.19) BS06 OXL ? GO:0004888 ... Q7NDN8 23667707
    20 4ire:E (3.19) BS01 OXL ? GO:0004888 ... Q7NDN8 23667707
    21 4ire:E (3.19) BS02 LMD ? GO:0004888 ... Q7NDN8 23667707
    22 4ire:E (3.19) BS03 LMD ? GO:0004888 ... Q7NDN8 23667707
    23 4ire:E (3.19) BS04 OXL ? GO:0004888 ... Q7NDN8 23667707
    24 4ire:E (3.19) BS05 OXL ? GO:0004888 ... Q7NDN8 23667707
    25 4ire:E (3.19) BS06 OXL ? GO:0004888 ... Q7NDN8 23667707
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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