Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4jya:B (3.098) BS01 rna ? GO:0003735 ... P80371 23812587
    2 4jya:C (3.098) BS01 rna ? GO:0003676 ... P80372 23812587
    3 4jya:D (3.098) BS01 rna ? GO:0003723 ... P80373 23812587
    4 4jya:E (3.098) BS01 rna ? GO:0003723 ... Q5SHQ5 23812587
    5 4jya:F (3.098) BS01 rna ? GO:0003735 ... Q5SLP8 23812587
    6 4jya:G (3.098) BS01 rna ? GO:0000028 ... P17291 23812587
    7 4jya:H (3.098) BS01 rna ? GO:0003735 ... P0DOY9 23812587
    8 4jya:I (3.098) BS01 rna ? GO:0000049 ... P80374 23812587
    9 4jya:J (3.098) BS01 rna ? GO:0000049 ... Q5SHN7 23812587
    10 4jya:K (3.098) BS01 rna ? GO:0003735 ... P80376 23812587
    11 4jya:L (3.098) BS01 rna ? GO:0000049 ... Q5SHN3 23812587
    12 4jya:M (3.098) BS01 rna ? GO:0000049 ... P80377 23812587
    13 4jya:N (3.098) BS01 rna ? GO:0003735 ... P0DOY6 23812587
    14 4jya:O (3.098) BS01 rna ? GO:0003735 ... Q5SJ76 23812587
    15 4jya:P (3.098) BS01 rna ? GO:0003735 ... Q5SJH3 23812587
    16 4jya:Q (3.098) BS01 rna ? GO:0003735 ... P0DOY7 23812587
    17 4jya:R (3.098) BS01 rna ? GO:0003735 ... Q5SLQ0 23812587
    18 4jya:S (3.098) BS01 rna ? GO:0003723 ... Q5SHP2 23812587
    19 4jya:T (3.098) BS01 rna ? GO:0003723 ... P80380 23812587
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218