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BioLiP
Download all results in tab-seperated text for 136 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4pbu:A (5.0) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 25043005
    2 4pbu:A (5.0) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 25043005
    3 4pbu:A (5.0) BS03 BCT 1.10.3.9 GO:0005506 ... P0A444 25043005
    4 4pbu:A (5.0) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    5 4pbu:A (5.0) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    6 4pbu:A (5.0) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    7 4pbu:A (5.0) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    8 4pbu:A (5.0) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    9 4pbu:A (5.0) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    10 4pbu:A (5.0) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    11 4pbu:A (5.0) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    12 4pbu:B (5.0) BS01 CLA ? GO:0009521 ... Q8DIQ1 25043005
    13 4pbu:B (5.0) BS02 CLA ? GO:0009521 ... Q8DIQ1 25043005
    14 4pbu:B (5.0) BS03 CLA ? GO:0009521 ... Q8DIQ1 25043005
    15 4pbu:B (5.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 25043005
    16 4pbu:B (5.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 25043005
    17 4pbu:B (5.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 25043005
    18 4pbu:B (5.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 25043005
    19 4pbu:B (5.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 25043005
    20 4pbu:B (5.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 25043005
    21 4pbu:B (5.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 25043005
    22 4pbu:B (5.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 25043005
    23 4pbu:B (5.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 25043005
    24 4pbu:B (5.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 25043005
    25 4pbu:B (5.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 25043005
    26 4pbu:B (5.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 25043005
    27 4pbu:B (5.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 25043005
    28 4pbu:C (5.0) BS01 OEX ? GO:0005737 ... Q8DIF8 25043005
    29 4pbu:C (5.0) BS02 CLA ? GO:0005737 ... Q8DIF8 25043005
    30 4pbu:C (5.0) BS03 CLA ? GO:0005737 ... Q8DIF8 25043005
    31 4pbu:C (5.0) BS04 CLA ? GO:0005737 ... Q8DIF8 25043005
    32 4pbu:C (5.0) BS05 CLA ? GO:0005737 ... Q8DIF8 25043005
    33 4pbu:C (5.0) BS06 CLA ? GO:0005737 ... Q8DIF8 25043005
    34 4pbu:C (5.0) BS07 CLA ? GO:0005737 ... Q8DIF8 25043005
    35 4pbu:C (5.0) BS08 CLA ? GO:0005737 ... Q8DIF8 25043005
    36 4pbu:C (5.0) BS09 CLA ? GO:0005737 ... Q8DIF8 25043005
    37 4pbu:C (5.0) BS10 CLA ? GO:0005737 ... Q8DIF8 25043005
    38 4pbu:C (5.0) BS11 CLA ? GO:0005737 ... Q8DIF8 25043005
    39 4pbu:C (5.0) BS12 CLA ? GO:0005737 ... Q8DIF8 25043005
    40 4pbu:C (5.0) BS13 CLA ? GO:0005737 ... Q8DIF8 25043005
    41 4pbu:C (5.0) BS14 CLA ? GO:0005737 ... Q8DIF8 25043005
    42 4pbu:D (5.0) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    43 4pbu:D (5.0) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    44 4pbu:D (5.0) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    45 4pbu:D (5.0) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    46 4pbu:D (5.0) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    47 4pbu:D (5.0) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    48 4pbu:D (5.0) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    49 4pbu:D (5.0) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    50 4pbu:D (5.0) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    51 4pbu:D (5.0) BS10 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    52 4pbu:E (5.0) BS01 HEM ? GO:0005506 ... Q8DIP0 25043005
    53 4pbu:F (5.0) BS01 HEM ? GO:0009523 ... Q8DIN9 25043005
    54 4pbu:H (5.0) BS01 CLA ? GO:0009523 ... Q8DJ43 25043005
    55 4pbu:H (5.0) BS02 CLA ? GO:0009523 ... Q8DJ43 25043005
    56 4pbu:H (5.0) BS03 CLA ? GO:0009523 ... Q8DJ43 25043005
    57 4pbu:H (5.0) BS04 CLA ? GO:0009523 ... Q8DJ43 25043005
    58 4pbu:H (5.0) BS05 CLA ? GO:0009523 ... Q8DJ43 25043005
    59 4pbu:I (5.0) BS01 CLA ? GO:0005737 ... Q8DJZ6 25043005
    60 4pbu:J (5.0) BS01 peptide ? GO:0009523 ... P59087 25043005
    61 4pbu:K (5.0) BS01 peptide ? GO:0009523 ... Q9F1K9 25043005
    62 4pbu:K (5.0) BS02 CLA ? GO:0009523 ... Q9F1K9 25043005
    63 4pbu:K (5.0) BS03 CLA ? GO:0009523 ... Q9F1K9 25043005
    64 4pbu:O (5.0) BS01 CA ? GO:0009523 ... P0A431 25043005
    65 4pbu:V (5.0) BS01 HEM ? GO:0005506 ... P0A386 25043005
    66 4pbu:X (5.0) BS01 CLA ? GO:0009523 ... Q9F1R6 25043005
    67 4pbu:Z (5.0) BS01 peptide ? GO:0009523 ... Q8DHJ2 25043005
    68 4pbu:a (5.0) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 25043005
    69 4pbu:a (5.0) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 25043005
    70 4pbu:a (5.0) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    71 4pbu:a (5.0) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    72 4pbu:a (5.0) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    73 4pbu:a (5.0) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    74 4pbu:a (5.0) BS07 BCT 1.10.3.9 GO:0005506 ... P0A444 25043005
    75 4pbu:a (5.0) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    76 4pbu:a (5.0) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    77 4pbu:a (5.0) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    78 4pbu:a (5.0) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    79 4pbu:b (5.0) BS01 CLA ? GO:0009521 ... Q8DIQ1 25043005
    80 4pbu:b (5.0) BS02 CLA ? GO:0009521 ... Q8DIQ1 25043005
    81 4pbu:b (5.0) BS03 CLA ? GO:0009521 ... Q8DIQ1 25043005
    82 4pbu:b (5.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 25043005
    83 4pbu:b (5.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 25043005
    84 4pbu:b (5.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 25043005
    85 4pbu:b (5.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 25043005
    86 4pbu:b (5.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 25043005
    87 4pbu:b (5.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 25043005
    88 4pbu:b (5.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 25043005
    89 4pbu:b (5.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 25043005
    90 4pbu:b (5.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 25043005
    91 4pbu:b (5.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 25043005
    92 4pbu:b (5.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 25043005
    93 4pbu:b (5.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 25043005
    94 4pbu:b (5.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 25043005
    95 4pbu:c (5.0) BS01 OEX ? GO:0005737 ... Q8DIF8 25043005
    96 4pbu:c (5.0) BS02 CA ? GO:0005737 ... Q8DIF8 25043005
    97 4pbu:c (5.0) BS03 CLA ? GO:0005737 ... Q8DIF8 25043005
    98 4pbu:c (5.0) BS04 CLA ? GO:0005737 ... Q8DIF8 25043005
    99 4pbu:c (5.0) BS05 CLA ? GO:0005737 ... Q8DIF8 25043005
    100 4pbu:c (5.0) BS06 CLA ? GO:0005737 ... Q8DIF8 25043005
    101 4pbu:c (5.0) BS07 CLA ? GO:0005737 ... Q8DIF8 25043005
    102 4pbu:c (5.0) BS08 CLA ? GO:0005737 ... Q8DIF8 25043005
    103 4pbu:c (5.0) BS09 CLA ? GO:0005737 ... Q8DIF8 25043005
    104 4pbu:c (5.0) BS10 CLA ? GO:0005737 ... Q8DIF8 25043005
    105 4pbu:c (5.0) BS11 CLA ? GO:0005737 ... Q8DIF8 25043005
    106 4pbu:c (5.0) BS12 CLA ? GO:0005737 ... Q8DIF8 25043005
    107 4pbu:c (5.0) BS13 CLA ? GO:0005737 ... Q8DIF8 25043005
    108 4pbu:c (5.0) BS14 CLA ? GO:0005737 ... Q8DIF8 25043005
    109 4pbu:c (5.0) BS15 CLA ? GO:0005737 ... Q8DIF8 25043005
    110 4pbu:d (5.0) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    111 4pbu:d (5.0) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    112 4pbu:d (5.0) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    113 4pbu:d (5.0) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    114 4pbu:d (5.0) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    115 4pbu:d (5.0) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    116 4pbu:d (5.0) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    117 4pbu:d (5.0) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    118 4pbu:d (5.0) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    119 4pbu:d (5.0) BS10 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    120 4pbu:e (5.0) BS01 HEM ? GO:0005506 ... Q8DIP0 25043005
    121 4pbu:f (5.0) BS01 HEM ? GO:0009523 ... Q8DIN9 25043005
    122 4pbu:h (5.0) BS01 CLA ? GO:0009523 ... Q8DJ43 25043005
    123 4pbu:h (5.0) BS02 CLA ? GO:0009523 ... Q8DJ43 25043005
    124 4pbu:h (5.0) BS03 CLA ? GO:0009523 ... Q8DJ43 25043005
    125 4pbu:i (5.0) BS01 CLA ? GO:0005737 ... Q8DJZ6 25043005
    126 4pbu:i (5.0) BS02 CLA ? GO:0005737 ... Q8DJZ6 25043005
    127 4pbu:j (5.0) BS01 peptide ? GO:0009523 ... P59087 25043005
    128 4pbu:j (5.0) BS02 MG ? GO:0009523 ... P59087 25043005
    129 4pbu:k (5.0) BS01 peptide ? GO:0009523 ... Q9F1K9 25043005
    130 4pbu:k (5.0) BS02 CLA ? GO:0009523 ... Q9F1K9 25043005
    131 4pbu:k (5.0) BS03 CLA ? GO:0009523 ... Q9F1K9 25043005
    132 4pbu:o (5.0) BS01 CA ? GO:0009523 ... P0A431 25043005
    133 4pbu:v (5.0) BS01 HEM ? GO:0005506 ... P0A386 25043005
    134 4pbu:x (5.0) BS01 CLA ? GO:0009523 ... Q9F1R6 25043005
    135 4pbu:z (5.0) BS01 peptide ? GO:0009523 ... Q8DHJ2 25043005
    136 4pbu:z (5.0) BS02 CLA ? GO:0009523 ... Q8DHJ2 25043005
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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