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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ret:A (4.0) BS01 GLC 7.2.2.13 GO:0000166 ... P05024 25624492
    2 4ret:A (4.0) BS02 FRU 7.2.2.13 GO:0000166 ... P05024 25624492
    3 4ret:A (4.0) BS03 FRU 7.2.2.13 GO:0000166 ... P05024 25624492
    4 4ret:A (4.0) BS04 MG 7.2.2.13 GO:0000166 ... P05024 25624492
    5 4ret:A (4.0) BS05 MG 7.2.2.13 GO:0000166 ... P05024 25624492
    6 4ret:A (4.0) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    7 4ret:A (4.0) BS07 DGX 7.2.2.13 GO:0000166 ... P05024 25624492 PDBbind: -logKd/Ki=7.59, Kd=26nM
    8 4ret:A (4.0) BS08 17F 7.2.2.13 GO:0000166 ... P05024 25624492
    9 4ret:A (4.0) BS09 17F 7.2.2.13 GO:0000166 ... P05024 25624492
    10 4ret:A (4.0) BS10 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    11 4ret:B (4.0) BS01 17F ? GO:0001671 ... P05027 25624492
    12 4ret:C (4.0) BS01 FRU 7.2.2.13 GO:0000166 ... P05024 25624492
    13 4ret:C (4.0) BS02 FRU 7.2.2.13 GO:0000166 ... P05024 25624492
    14 4ret:C (4.0) BS03 MG 7.2.2.13 GO:0000166 ... P05024 25624492
    15 4ret:C (4.0) BS04 MG 7.2.2.13 GO:0000166 ... P05024 25624492
    16 4ret:C (4.0) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    17 4ret:C (4.0) BS06 DGX 7.2.2.13 GO:0000166 ... P05024 25624492
    18 4ret:C (4.0) BS07 CLR 7.2.2.13 GO:0000166 ... P05024 25624492
    19 4ret:E (4.0) BS01 CLR ? GO:0001671 ... Q58K79 25624492
    20 4ret:G (4.0) BS01 CLR ? GO:0001671 ... Q58K79 25624492
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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