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BioLiP
Download all results in tab-seperated text for 126 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4tnh:A (4.90001) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 25006873
    2 4tnh:A (4.90001) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    3 4tnh:A (4.90001) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    4 4tnh:A (4.90001) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    5 4tnh:A (4.90001) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    6 4tnh:A (4.90001) BS06 OEX 1.10.3.9 GO:0005506 ... P0A444 25006873
    7 4tnh:A (4.90001) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    8 4tnh:A (4.90001) BS08 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    9 4tnh:A (4.90001) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    10 4tnh:A (4.90001) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 25006873
    11 4tnh:B (4.90001) BS01 CLA ? GO:0009521 ... Q8DIQ1 25006873
    12 4tnh:B (4.90001) BS02 CLA ? GO:0009521 ... Q8DIQ1 25006873
    13 4tnh:B (4.90001) BS03 CLA ? GO:0009521 ... Q8DIQ1 25006873
    14 4tnh:B (4.90001) BS04 CLA ? GO:0009521 ... Q8DIQ1 25006873
    15 4tnh:B (4.90001) BS05 CLA ? GO:0009521 ... Q8DIQ1 25006873
    16 4tnh:B (4.90001) BS06 CLA ? GO:0009521 ... Q8DIQ1 25006873
    17 4tnh:B (4.90001) BS07 CLA ? GO:0009521 ... Q8DIQ1 25006873
    18 4tnh:B (4.90001) BS08 CLA ? GO:0009521 ... Q8DIQ1 25006873
    19 4tnh:B (4.90001) BS09 CLA ? GO:0009521 ... Q8DIQ1 25006873
    20 4tnh:B (4.90001) BS10 CLA ? GO:0009521 ... Q8DIQ1 25006873
    21 4tnh:B (4.90001) BS11 CLA ? GO:0009521 ... Q8DIQ1 25006873
    22 4tnh:B (4.90001) BS12 CLA ? GO:0009521 ... Q8DIQ1 25006873
    23 4tnh:B (4.90001) BS13 CLA ? GO:0009521 ... Q8DIQ1 25006873
    24 4tnh:B (4.90001) BS14 CLA ? GO:0009521 ... Q8DIQ1 25006873
    25 4tnh:B (4.90001) BS15 CLA ? GO:0009521 ... Q8DIQ1 25006873
    26 4tnh:B (4.90001) BS16 CLA ? GO:0009521 ... Q8DIQ1 25006873
    27 4tnh:C (4.90001) BS01 CLA ? GO:0005737 ... Q8DIF8 25006873
    28 4tnh:C (4.90001) BS02 CLA ? GO:0005737 ... Q8DIF8 25006873
    29 4tnh:C (4.90001) BS03 CLA ? GO:0005737 ... Q8DIF8 25006873
    30 4tnh:C (4.90001) BS04 CLA ? GO:0005737 ... Q8DIF8 25006873
    31 4tnh:C (4.90001) BS05 CLA ? GO:0005737 ... Q8DIF8 25006873
    32 4tnh:C (4.90001) BS06 CLA ? GO:0005737 ... Q8DIF8 25006873
    33 4tnh:C (4.90001) BS07 CLA ? GO:0005737 ... Q8DIF8 25006873
    34 4tnh:C (4.90001) BS08 CLA ? GO:0005737 ... Q8DIF8 25006873
    35 4tnh:C (4.90001) BS09 CLA ? GO:0005737 ... Q8DIF8 25006873
    36 4tnh:C (4.90001) BS10 CLA ? GO:0005737 ... Q8DIF8 25006873
    37 4tnh:C (4.90001) BS11 CLA ? GO:0005737 ... Q8DIF8 25006873
    38 4tnh:C (4.90001) BS12 CLA ? GO:0005737 ... Q8DIF8 25006873
    39 4tnh:C (4.90001) BS13 CLA ? GO:0005737 ... Q8DIF8 25006873
    40 4tnh:D (4.90001) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    41 4tnh:D (4.90001) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    42 4tnh:D (4.90001) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    43 4tnh:D (4.90001) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    44 4tnh:D (4.90001) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    45 4tnh:D (4.90001) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    46 4tnh:D (4.90001) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    47 4tnh:D (4.90001) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    48 4tnh:D (4.90001) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    49 4tnh:E (4.90001) BS01 peptide ? GO:0005506 ... Q8DIP0 25006873
    50 4tnh:E (4.90001) BS02 HEM ? GO:0005506 ... Q8DIP0 25006873
    51 4tnh:F (4.90001) BS01 HEM ? GO:0005506 ... Q8DIN9 25006873
    52 4tnh:H (4.90001) BS01 CLA ? GO:0009523 ... Q8DJ43 25006873
    53 4tnh:H (4.90001) BS02 CLA ? GO:0009523 ... Q8DJ43 25006873
    54 4tnh:H (4.90001) BS03 CLA ? GO:0009523 ... Q8DJ43 25006873
    55 4tnh:I (4.90001) BS01 CLA ? GO:0005737 ... Q8DJZ6 25006873
    56 4tnh:K (4.90001) BS01 peptide ? GO:0005737 ... Q9F1K9 25006873
    57 4tnh:K (4.90001) BS02 CLA ? GO:0005737 ... Q9F1K9 25006873
    58 4tnh:K (4.90001) BS03 CLA ? GO:0005737 ... Q9F1K9 25006873
    59 4tnh:K (4.90001) BS04 CA ? GO:0005737 ... Q9F1K9 25006873
    60 4tnh:O (4.90001) BS01 CA ? GO:0009654 ... P0A431 25006873
    61 4tnh:V (4.90001) BS01 HEM ? GO:0005506 ... P0A386 25006873
    62 4tnh:Z (4.90001) BS01 peptide ? GO:0009523 ... Q8DHJ2 25006873
    63 4tnh:Z (4.90001) BS02 CLA ? GO:0009523 ... Q8DHJ2 25006873
    64 4tnh:a (4.90001) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 25006873
    65 4tnh:a (4.90001) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    66 4tnh:a (4.90001) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    67 4tnh:a (4.90001) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    68 4tnh:a (4.90001) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    69 4tnh:a (4.90001) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    70 4tnh:a (4.90001) BS07 OEX 1.10.3.9 GO:0005506 ... P0A444 25006873
    71 4tnh:a (4.90001) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 25006873
    72 4tnh:a (4.90001) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 25006873
    73 4tnh:a (4.90001) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 25006873
    74 4tnh:b (4.90001) BS01 CLA ? GO:0009521 ... Q8DIQ1 25006873
    75 4tnh:b (4.90001) BS02 CLA ? GO:0009521 ... Q8DIQ1 25006873
    76 4tnh:b (4.90001) BS03 CLA ? GO:0009521 ... Q8DIQ1 25006873
    77 4tnh:b (4.90001) BS04 CLA ? GO:0009521 ... Q8DIQ1 25006873
    78 4tnh:b (4.90001) BS05 CLA ? GO:0009521 ... Q8DIQ1 25006873
    79 4tnh:b (4.90001) BS06 CLA ? GO:0009521 ... Q8DIQ1 25006873
    80 4tnh:b (4.90001) BS07 CLA ? GO:0009521 ... Q8DIQ1 25006873
    81 4tnh:b (4.90001) BS08 CLA ? GO:0009521 ... Q8DIQ1 25006873
    82 4tnh:b (4.90001) BS09 CLA ? GO:0009521 ... Q8DIQ1 25006873
    83 4tnh:b (4.90001) BS10 CLA ? GO:0009521 ... Q8DIQ1 25006873
    84 4tnh:b (4.90001) BS11 CLA ? GO:0009521 ... Q8DIQ1 25006873
    85 4tnh:b (4.90001) BS12 CLA ? GO:0009521 ... Q8DIQ1 25006873
    86 4tnh:b (4.90001) BS13 CLA ? GO:0009521 ... Q8DIQ1 25006873
    87 4tnh:b (4.90001) BS14 CLA ? GO:0009521 ... Q8DIQ1 25006873
    88 4tnh:b (4.90001) BS15 CLA ? GO:0009521 ... Q8DIQ1 25006873
    89 4tnh:b (4.90001) BS16 CLA ? GO:0009521 ... Q8DIQ1 25006873
    90 4tnh:c (4.90001) BS01 CLA ? GO:0005737 ... Q8DIF8 25006873
    91 4tnh:c (4.90001) BS02 CLA ? GO:0005737 ... Q8DIF8 25006873
    92 4tnh:c (4.90001) BS03 CLA ? GO:0005737 ... Q8DIF8 25006873
    93 4tnh:c (4.90001) BS04 CLA ? GO:0005737 ... Q8DIF8 25006873
    94 4tnh:c (4.90001) BS05 CLA ? GO:0005737 ... Q8DIF8 25006873
    95 4tnh:c (4.90001) BS06 CLA ? GO:0005737 ... Q8DIF8 25006873
    96 4tnh:c (4.90001) BS07 CLA ? GO:0005737 ... Q8DIF8 25006873
    97 4tnh:c (4.90001) BS08 CLA ? GO:0005737 ... Q8DIF8 25006873
    98 4tnh:c (4.90001) BS09 CLA ? GO:0005737 ... Q8DIF8 25006873
    99 4tnh:c (4.90001) BS10 CLA ? GO:0005737 ... Q8DIF8 25006873
    100 4tnh:c (4.90001) BS11 CLA ? GO:0005737 ... Q8DIF8 25006873
    101 4tnh:c (4.90001) BS12 CLA ? GO:0005737 ... Q8DIF8 25006873
    102 4tnh:c (4.90001) BS13 CLA ? GO:0005737 ... Q8DIF8 25006873
    103 4tnh:d (4.90001) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    104 4tnh:d (4.90001) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    105 4tnh:d (4.90001) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    106 4tnh:d (4.90001) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    107 4tnh:d (4.90001) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    108 4tnh:d (4.90001) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    109 4tnh:d (4.90001) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    110 4tnh:d (4.90001) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    111 4tnh:d (4.90001) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25006873
    112 4tnh:e (4.90001) BS01 peptide ? GO:0005506 ... Q8DIP0 25006873
    113 4tnh:e (4.90001) BS02 HEM ? GO:0005506 ... Q8DIP0 25006873
    114 4tnh:f (4.90001) BS01 HEM ? GO:0005506 ... Q8DIN9 25006873
    115 4tnh:h (4.90001) BS01 CLA ? GO:0009523 ... Q8DJ43 25006873
    116 4tnh:h (4.90001) BS02 CLA ? GO:0009523 ... Q8DJ43 25006873
    117 4tnh:h (4.90001) BS03 CLA ? GO:0009523 ... Q8DJ43 25006873
    118 4tnh:i (4.90001) BS01 CLA ? GO:0005737 ... Q8DJZ6 25006873
    119 4tnh:k (4.90001) BS01 peptide ? GO:0005737 ... Q9F1K9 25006873
    120 4tnh:k (4.90001) BS02 CLA ? GO:0005737 ... Q9F1K9 25006873
    121 4tnh:k (4.90001) BS03 CLA ? GO:0005737 ... Q9F1K9 25006873
    122 4tnh:k (4.90001) BS04 CA ? GO:0005737 ... Q9F1K9 25006873
    123 4tnh:o (4.90001) BS01 CA ? GO:0009654 ... P0A431 25006873
    124 4tnh:v (4.90001) BS01 HEM ? GO:0005506 ... P0A386 25006873
    125 4tnh:z (4.90001) BS01 peptide ? GO:0009523 ... Q8DHJ2 25006873
    126 4tnh:z (4.90001) BS02 CLA ? GO:0009523 ... Q8DHJ2 25006873
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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