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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wjg:1 (3.1) BS01 HEM ? GO:0004601 ... P68871 25410714
    2 4wjg:4 (3.1) BS01 HEM ? GO:0046872 ... I7BA80 25410714
    3 4wjg:A (3.1) BS01 HEM ? GO:0004601 ... P69905 25410714
    4 4wjg:B (3.1) BS01 HEM ? GO:0004601 ... P68871 25410714
    5 4wjg:B (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    6 4wjg:F (3.1) BS01 HEM ? GO:0004601 ... P69905 25410714
    7 4wjg:G (3.1) BS01 HEM ? GO:0004601 ... P68871 25410714
    8 4wjg:G (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    9 4wjg:J (3.1) BS01 HEM ? GO:0046872 ... I7BA80 25410714
    10 4wjg:K (3.1) BS01 HEM ? GO:0004601 ... P69905 25410714
    11 4wjg:L (3.1) BS01 HEM ? GO:0004601 ... P68871 25410714
    12 4wjg:L (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    13 4wjg:P (3.1) BS01 HEM ? GO:0004601 ... P69905 25410714
    14 4wjg:Q (3.1) BS01 HEM ? GO:0004601 ... P68871 25410714
    15 4wjg:Q (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    16 4wjg:U (3.1) BS01 HEM ? GO:0004601 ... P69905 25410714
    17 4wjg:U (3.1) BS02 OXY ? GO:0004601 ... P69905 25410714
    18 4wjg:V (3.1) BS01 HEM ? GO:0004601 ... P68871 25410714
    19 4wjg:V (3.1) BS02 OXY ? GO:0004601 ... P68871 25410714
    20 4wjg:Y (3.1) BS01 HEM ? GO:0046872 ... I7BA80 25410714
    21 4wjg:Z (3.1) BS01 HEM ? GO:0004601 ... P69905 25410714
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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