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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5fmf:1 (6.0) BS01 dna 3.6.4.12 GO:0003677 ... Q00578 26483468
    2 5fmf:2 (6.0) BS01 ZN ? GO:0003676 ... P07273 26483468
    3 5fmf:A (6.0) BS01 dna 2.7.7.6 GO:0000428 ... P04050 26483468
    4 5fmf:A (6.0) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 26483468
    5 5fmf:A (6.0) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 26483468
    6 5fmf:A (6.0) BS04 MG 2.7.7.6 GO:0000428 ... P04050 26483468
    7 5fmf:B (6.0) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 26483468
    8 5fmf:C (6.0) BS01 ZN ? GO:0003677 ... P16370 26483468
    9 5fmf:I (6.0) BS01 ZN ? GO:0000428 ... P27999 26483468
    10 5fmf:I (6.0) BS02 ZN ? GO:0000428 ... P27999 26483468
    11 5fmf:J (6.0) BS01 ZN ? GO:0000428 ... P22139 26483468
    12 5fmf:L (6.0) BS01 ZN ? GO:0003677 ... P40422 26483468
    13 5fmf:M (6.0) BS01 dna ? GO:0005672 ... P32773 26483468
    14 5fmf:P (6.0) BS01 dna ? GO:0000979 ... P29055 26483468
    15 5fmf:Q (6.0) BS01 dna ? GO:0003677 ... P13393 26483468
    16 5fmf:Q (6.0) BS02 dna ? GO:0003677 ... P13393 26483468
    17 5fmf:U (6.0) BS01 dna ? GO:0003677 ... P41895 26483468
    18 5fmf:V (6.0) BS01 dna 3.6.4.12 GO:0005674 ... P41896 26483468
    19 5fmf:V (6.0) BS02 dna 3.6.4.12 GO:0005674 ... P41896 26483468
    20 5fmf:X (6.0) BS01 dna ? GO:0000439 ... Q3E7C1 26483468
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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