Hello,
For the predicted binding site from the online I-Tasser prediction, I
get a little confused with the result.
For instance,
Rank 1, "Predicted binding site residues in the model" is
14,23,26,27,29,30,33,36,40,111,114,115,121,122.
Rank 2, "Predicted binding site residues in the model" is
257,260,261,264,267,268,425,428,429,435
............
Are these binding site locations for my query protein or for the template
protein? I guess it is for template protein, because the predicted
binding sites are so different. If so, how can I know the binding site
of the query protein?
Best,
Haiwei Luo
University of Georgia