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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 384 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4xk8:B (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    202 4xk8:B (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    203 4xk8:B (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    204 4xk8:B (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    205 4xk8:B (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    206 4xk8:B (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    207 4xk8:B (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    208 4xk8:B (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    209 4xk8:B (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    210 4xk8:B (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    211 4xk8:B (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    212 4xk8:B (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    213 4xk8:B (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    214 4xk8:B (2.8) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    215 4xk8:B (2.8) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    216 4xk8:B (2.8) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    217 4xk8:B (2.8) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    218 4xk8:B (2.8) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    219 4xk8:B (2.8) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    220 4xk8:B (2.8) BS43 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    221 4xk8:B (2.8) BS44 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    222 4xk8:B (2.8) BS45 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    223 4xk8:B (2.8) BS46 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    224 4xk8:B (2.8) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    225 4xk8:B (2.8) BS48 PQN 1.97.1.12 GO:0000287 ... P05311 26023133
    226 4xk8:B (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    227 4xk8:C (2.8) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 26023133
    228 4xk8:C (2.8) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 26023133
    229 4xk8:F (2.8) BS01 CLA ? GO:0009522 ... P12355 26023133
    230 4xk8:F (2.8) BS02 CLA ? GO:0009522 ... P12355 26023133
    231 4xk8:F (2.8) BS03 CLA ? GO:0009522 ... P12355 26023133
    232 4xk8:F (2.8) BS04 CLA ? GO:0009522 ... P12355 26023133
    233 4xk8:F (2.8) BS05 CLA ? GO:0009522 ... P12355 26023133
    234 4xk8:G (2.8) BS01 CLA ? GO:0009522 ... P12357 26023133
    235 4xk8:G (2.8) BS02 CLA ? GO:0009522 ... P12357 26023133
    236 4xk8:G (2.8) BS03 CLA ? GO:0009522 ... P12357 26023133
    237 4xk8:G (2.8) BS04 CLA ? GO:0009522 ... P12357 26023133
    238 4xk8:G (2.8) BS05 CLA ? GO:0009522 ... P12357 26023133
    239 4xk8:H (2.8) BS01 CLA ? GO:0009522 ... C6T221 26023133
    240 4xk8:J (2.8) BS01 CLA ? GO:0009522 ... A4GGC6 26023133
    241 4xk8:J (2.8) BS02 CLA ? GO:0009522 ... A4GGC6 26023133
    242 4xk8:J (2.8) BS03 CLA ? GO:0009522 ... A4GGC6 26023133
    243 4xk8:J (2.8) BS04 CLA ? GO:0009522 ... A4GGC6 26023133
    244 4xk8:J (2.8) BS05 CLA ? GO:0009522 ... A4GGC6 26023133
    245 4xk8:K (2.8) BS01 CLA ? GO:0009507 ... E1C9L3 26023133
    246 4xk8:K (2.8) BS02 CLA ? GO:0009507 ... E1C9L3 26023133
    247 4xk8:K (2.8) BS03 CLA ? GO:0009507 ... E1C9L3 26023133
    248 4xk8:L (2.8) BS01 peptide ? GO:0009522 ... E1C9L1 26023133
    249 4xk8:L (2.8) BS02 CLA ? GO:0009522 ... E1C9L1 26023133
    250 4xk8:L (2.8) BS03 CLA ? GO:0009522 ... E1C9L1 26023133
    251 4xk8:L (2.8) BS04 CLA ? GO:0009522 ... E1C9L1 26023133
    252 4xk8:L (2.8) BS05 CLA ? GO:0009522 ... E1C9L1 26023133
    253 4xk8:L (2.8) BS06 CLA ? GO:0009522 ... E1C9L1 26023133
    254 4xk8:L (2.8) BS07 CLA ? GO:0009522 ... E1C9L1 26023133
    255 4xk8:a (2.8) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    256 4xk8:a (2.8) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    257 4xk8:a (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    258 4xk8:a (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    259 4xk8:a (2.8) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    260 4xk8:a (2.8) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    261 4xk8:a (2.8) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    262 4xk8:a (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    263 4xk8:a (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    264 4xk8:a (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    265 4xk8:a (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    266 4xk8:a (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    267 4xk8:a (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    268 4xk8:a (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    269 4xk8:a (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    270 4xk8:a (2.8) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    271 4xk8:a (2.8) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    272 4xk8:a (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    273 4xk8:a (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    274 4xk8:a (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    275 4xk8:a (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    276 4xk8:a (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    277 4xk8:a (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    278 4xk8:a (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    279 4xk8:a (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    280 4xk8:a (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    281 4xk8:a (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    282 4xk8:a (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    283 4xk8:a (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    284 4xk8:a (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    285 4xk8:a (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    286 4xk8:a (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    287 4xk8:a (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    288 4xk8:a (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    289 4xk8:a (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    290 4xk8:a (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    291 4xk8:a (2.8) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    292 4xk8:a (2.8) BS38 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    293 4xk8:a (2.8) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    294 4xk8:a (2.8) BS40 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    295 4xk8:a (2.8) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    296 4xk8:a (2.8) BS42 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    297 4xk8:a (2.8) BS43 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    298 4xk8:a (2.8) BS44 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    299 4xk8:a (2.8) BS45 PQN 1.97.1.12 GO:0000287 ... P05310 26023133
    300 4xk8:a (2.8) BS46 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    301 4xk8:a (2.8) BS47 SF4 1.97.1.12 GO:0000287 ... P05310 26023133
    302 4xk8:a (2.8) BS48 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    303 4xk8:a (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    304 4xk8:a (2.8) BS50 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    305 4xk8:a (2.8) BS51 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    306 4xk8:a (2.8) BS52 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    307 4xk8:b (2.8) BS01 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    308 4xk8:b (2.8) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    309 4xk8:b (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    310 4xk8:b (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    311 4xk8:b (2.8) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    312 4xk8:b (2.8) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    313 4xk8:b (2.8) BS07 SF4 1.97.1.12 GO:0000287 ... P05311 26023133
    314 4xk8:b (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    315 4xk8:b (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    316 4xk8:b (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    317 4xk8:b (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    318 4xk8:b (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    319 4xk8:b (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    320 4xk8:b (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    321 4xk8:b (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    322 4xk8:b (2.8) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    323 4xk8:b (2.8) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    324 4xk8:b (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    325 4xk8:b (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    326 4xk8:b (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    327 4xk8:b (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    328 4xk8:b (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    329 4xk8:b (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    330 4xk8:b (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    331 4xk8:b (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    332 4xk8:b (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    333 4xk8:b (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    334 4xk8:b (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    335 4xk8:b (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    336 4xk8:b (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    337 4xk8:b (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    338 4xk8:b (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    339 4xk8:b (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    340 4xk8:b (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    341 4xk8:b (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    342 4xk8:b (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    343 4xk8:b (2.8) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    344 4xk8:b (2.8) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    345 4xk8:b (2.8) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    346 4xk8:b (2.8) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    347 4xk8:b (2.8) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    348 4xk8:b (2.8) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    349 4xk8:b (2.8) BS43 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    350 4xk8:b (2.8) BS44 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    351 4xk8:b (2.8) BS45 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    352 4xk8:b (2.8) BS46 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    353 4xk8:b (2.8) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    354 4xk8:b (2.8) BS48 PQN 1.97.1.12 GO:0000287 ... P05311 26023133
    355 4xk8:b (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    356 4xk8:c (2.8) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 26023133
    357 4xk8:c (2.8) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 26023133
    358 4xk8:f (2.8) BS01 CLA ? GO:0009522 ... P12355 26023133
    359 4xk8:f (2.8) BS02 CLA ? GO:0009522 ... P12355 26023133
    360 4xk8:f (2.8) BS03 CLA ? GO:0009522 ... P12355 26023133
    361 4xk8:f (2.8) BS04 CLA ? GO:0009522 ... P12355 26023133
    362 4xk8:g (2.8) BS01 CLA ? GO:0009522 ... P12357 26023133
    363 4xk8:g (2.8) BS02 CLA ? GO:0009522 ... P12357 26023133
    364 4xk8:g (2.8) BS03 CLA ? GO:0009522 ... P12357 26023133
    365 4xk8:g (2.8) BS04 CLA ? GO:0009522 ... P12357 26023133
    366 4xk8:g (2.8) BS05 CLA ? GO:0009522 ... P12357 26023133
    367 4xk8:h (2.8) BS01 CLA ? GO:0009522 ... C6T221 26023133
    368 4xk8:h (2.8) BS02 CLA ? GO:0009522 ... C6T221 26023133
    369 4xk8:i (2.8) BS01 CLA ? GO:0009522 ... P17227 26023133
    370 4xk8:i (2.8) BS02 CLA ? GO:0009522 ... P17227 26023133
    371 4xk8:j (2.8) BS01 CLA ? GO:0009522 ... A4GGC6 26023133
    372 4xk8:j (2.8) BS02 CLA ? GO:0009522 ... A4GGC6 26023133
    373 4xk8:j (2.8) BS03 CLA ? GO:0009522 ... A4GGC6 26023133
    374 4xk8:j (2.8) BS04 CLA ? GO:0009522 ... A4GGC6 26023133
    375 4xk8:j (2.8) BS05 CLA ? GO:0009522 ... A4GGC6 26023133
    376 4xk8:k (2.8) BS01 CLA ? GO:0009507 ... E1C9L3 26023133
    377 4xk8:k (2.8) BS02 CLA ? GO:0009507 ... E1C9L3 26023133
    378 4xk8:k (2.8) BS03 CLA ? GO:0009507 ... E1C9L3 26023133
    379 4xk8:l (2.8) BS01 CLA ? GO:0009522 ... E1C9L1 26023133
    380 4xk8:l (2.8) BS02 CLA ? GO:0009522 ... E1C9L1 26023133
    381 4xk8:l (2.8) BS03 CLA ? GO:0009522 ... E1C9L1 26023133
    382 4xk8:l (2.8) BS04 CLA ? GO:0009522 ... E1C9L1 26023133
    383 4xk8:l (2.8) BS05 CLA ? GO:0009522 ... E1C9L1 26023133
    384 4xk8:l (2.8) BS06 CLA ? GO:0009522 ... E1C9L1 26023133
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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