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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 864790 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    859801 8vs9:L10 (3.9) BS01 rna ? N/A P0A7J3 38500588
    859802 8vs9:L11 (3.9) BS01 rna ? N/A P0A7J7 38500588
    859803 8vs9:L13 (3.9) BS01 rna ? N/A S1EW51 38500588
    859804 8vs9:L14 (3.9) BS01 rna ? N/A S1NW45 38500588
    859805 8vs9:L14 (3.9) BS02 rna ? N/A S1NW45 38500588
    859806 8vs9:L15 (3.9) BS01 rna ? N/A A0A037Y8L6 38500588
    859807 8vs9:L16 (3.9) BS01 rna ? N/A P0ADY7 38500588
    859808 8vs9:L16 (3.9) BS02 rna ? N/A P0ADY7 38500588
    859809 8vs9:L16 (3.9) BS03 rna ? N/A P0ADY7 38500588
    859810 8vs9:L17 (3.9) BS01 rna ? N/A C3SR72 38500588
    859811 8vs9:L18 (3.9) BS01 rna ? N/A S1E9N8 38500588
    859812 8vs9:L18 (3.9) BS02 rna ? N/A S1E9N8 38500588
    859813 8vs9:L19 (3.9) BS01 rna ? N/A V0AJX1 38500588
    859814 8vs9:L19 (3.9) BS02 rna ? N/A V0AJX1 38500588
    859815 8vs9:L20 (3.9) BS01 rna ? N/A B7MAS6 38500588
    859816 8vs9:L21 (3.9) BS01 rna ? N/A C3SSG2 38500588
    859817 8vs9:L22 (3.9) BS01 rna ? N/A P61175 38500588
    859818 8vs9:L23 (3.9) BS01 rna ? N/A U9Y6C4 38500588
    859819 8vs9:L24 (3.9) BS01 rna ? N/A A0A1X3KWX7 38500588
    859820 8vs9:L25 (3.9) BS01 rna ? N/A D7XH79 38500588
    859821 8vs9:L25 (3.9) BS02 rna ? N/A D7XH79 38500588
    859822 8vs9:L27 (3.9) BS01 rna ? N/A P0A7L8 38500588
    859823 8vs9:L27 (3.9) BS02 rna ? N/A P0A7L8 38500588
    859824 8vs9:L28 (3.9) BS01 rna ? N/A A0A1X3JA73 38500588
    859825 8vs9:L29 (3.9) BS01 rna ? N/A D6IEL0 38500588
    859826 8vs9:L30 (3.9) BS01 rna ? N/A C3SR32 38500588
    859827 8vs9:L30 (3.9) BS02 rna ? N/A C3SR32 38500588
    859828 8vs9:L31 (3.9) BS01 rna ? N/A C3SIV2 38500588
    859829 8vs9:L32 (3.9) BS01 rna ? N/A D7XI28 38500588
    859830 8vs9:L33 (3.9) BS01 rna ? N/A C3SME7 38500588
    859831 8vs9:L34 (3.9) BS01 rna ? N/A B7MGC4 38500588
    859832 8vs9:L35 (3.9) BS01 rna ? N/A P0A7Q1 38500588
    859833 8vs9:L36 (3.9) BS01 rna ? N/A A0A0E2L017 38500588
    859834 8vs9:S02 (3.9) BS01 rna ? N/A C3TPN2 38500588
    859835 8vs9:S02 (3.9) BS02 rna ? N/A C3TPN2 38500588
    859836 8vs9:S03 (3.9) BS01 rna ? N/A B7MCS9 38500588
    859837 8vs9:S03 (3.9) BS02 rna ? N/A B7MCS9 38500588
    859838 8vs9:S04 (3.9) BS01 rna ? N/A P0A7V8 38500588
    859839 8vs9:S05 (3.9) BS01 rna ? N/A P0A7W1 38500588
    859840 8vs9:S05 (3.9) BS02 rna ? N/A P0A7W1 38500588
    859841 8vs9:S06 (3.9) BS01 rna ? N/A P02358 38500588
    859842 8vs9:S07 (3.9) BS01 rna ? N/A P02359 38500588
    859843 8vs9:S07 (3.9) BS02 rna ? N/A P02359 38500588
    859844 8vs9:S08 (3.9) BS01 rna ? N/A D7XKZ3 38500588
    859845 8vs9:S09 (3.9) BS01 rna ? N/A C3SRY2 38500588
    859846 8vs9:S10 (3.9) BS01 rna ? N/A V0ANK5 38500588
    859847 8vs9:S11 (3.9) BS01 rna ? N/A B7MCR3 38500588
    859848 8vs9:S12 (3.9) BS01 rna ? N/A P0A7S3 38500588
    859849 8vs9:S13 (3.9) BS01 rna ? N/A A0A7U9IV78 38500588
    859850 8vs9:S13 (3.9) BS02 rna ? N/A A0A7U9IV78 38500588
    859851 8vs9:S14 (3.9) BS01 rna ? N/A A0A2X1PQW4 38500588
    859852 8vs9:S15 (3.9) BS01 rna ? N/A C3SSQ7 38500588
    859853 8vs9:S15 (3.9) BS02 rna ? N/A C3SSQ7 38500588
    859854 8vs9:S16 (3.9) BS01 rna ? N/A C3SYP2 38500588
    859855 8vs9:S17 (3.9) BS01 rna ? N/A C3SQY7 38500588
    859856 8vs9:S18 (3.9) BS01 rna ? N/A A0A0E2KXL3 38500588
    859857 8vs9:S19 (3.9) BS01 rna ? N/A S1EA57 38500588
    859858 8vs9:S19 (3.9) BS02 rna ? N/A S1EA57 38500588
    859859 8vs9:S20 (3.9) BS01 rna ? N/A C3TRH7 38500588
    859860 8vs9:S21 (3.9) BS01 rna ? N/A A0A0E2L2J1 38500588
    859861 8vs9:SMPB (3.9) BS01 rna ? N/A A0A2X1N680 38500588
    859862 8vs9:SMPB (3.9) BS02 rna ? N/A A0A2X1N680 38500588
    859863 8vs9:SMPB (3.9) BS03 rna ? N/A A0A2X1N680 38500588
    859864 8vs9:SMPB (3.9) BS04 rna ? N/A A0A2X1N680 38500588
    859865 8vsa:L02 (3.7) BS01 rna ? N/A P60422 38500588
    859866 8vsa:L02 (3.7) BS02 rna ? N/A P60422 38500588
    859867 8vsa:L03 (3.7) BS01 rna ? N/A P60438 38500588
    859868 8vsa:L04 (3.7) BS01 rna ? N/A A1AGK6 38500588
    859869 8vsa:L05 (3.7) BS01 rna ? N/A A0A140N5A3 38500588
    859870 8vsa:L05 (3.7) BS02 rna ? N/A A0A140N5A3 38500588
    859871 8vsa:L05 (3.7) BS03 rna ? N/A A0A140N5A3 38500588
    859872 8vsa:L06 (3.7) BS01 rna ? N/A C3SR17 38500588
    859873 8vsa:L09 (3.7) BS01 rna ? N/A C3SFP2 38500588
    859874 8vsa:L1 (3.7) BS01 rna ? N/A B7MIX0 38500588
    859875 8vsa:L10 (3.7) BS01 rna ? N/A P0A7J3 38500588
    859876 8vsa:L11 (3.7) BS01 rna ? N/A P0A7J7 38500588
    859877 8vsa:L13 (3.7) BS01 rna ? N/A S1EW51 38500588
    859878 8vsa:L14 (3.7) BS01 rna ? N/A S1NW45 38500588
    859879 8vsa:L14 (3.7) BS02 rna ? N/A S1NW45 38500588
    859880 8vsa:L15 (3.7) BS01 rna ? N/A A0A037Y8L6 38500588
    859881 8vsa:L16 (3.7) BS01 rna ? N/A P0ADY7 38500588
    859882 8vsa:L16 (3.7) BS02 rna ? N/A P0ADY7 38500588
    859883 8vsa:L16 (3.7) BS03 rna ? N/A P0ADY7 38500588
    859884 8vsa:L17 (3.7) BS01 rna ? N/A C3SR72 38500588
    859885 8vsa:L18 (3.7) BS01 rna ? N/A S1E9N8 38500588
    859886 8vsa:L18 (3.7) BS02 rna ? N/A S1E9N8 38500588
    859887 8vsa:L19 (3.7) BS01 rna ? N/A V0AJX1 38500588
    859888 8vsa:L19 (3.7) BS02 rna ? N/A V0AJX1 38500588
    859889 8vsa:L20 (3.7) BS01 rna ? N/A B7MAS6 38500588
    859890 8vsa:L21 (3.7) BS01 rna ? N/A C3SSG2 38500588
    859891 8vsa:L22 (3.7) BS01 rna ? N/A P61175 38500588
    859892 8vsa:L23 (3.7) BS01 rna ? N/A U9Y6C4 38500588
    859893 8vsa:L24 (3.7) BS01 rna ? N/A A0A1X3KWX7 38500588
    859894 8vsa:L25 (3.7) BS01 rna ? N/A D7XH79 38500588
    859895 8vsa:L27 (3.7) BS01 rna ? N/A P0A7L8 38500588
    859896 8vsa:L27 (3.7) BS02 rna ? N/A P0A7L8 38500588
    859897 8vsa:L28 (3.7) BS01 rna ? N/A A0A1X3JA73 38500588
    859898 8vsa:L29 (3.7) BS01 rna ? N/A D6IEL0 38500588
    859899 8vsa:L30 (3.7) BS01 rna ? N/A C3SR32 38500588
    859900 8vsa:L30 (3.7) BS02 rna ? N/A C3SR32 38500588
    859901 8vsa:L31 (3.7) BS01 rna ? N/A C3SIV2 38500588
    859902 8vsa:L32 (3.7) BS01 rna ? N/A D7XI28 38500588
    859903 8vsa:L33 (3.7) BS01 rna ? N/A C3SME7 38500588
    859904 8vsa:L34 (3.7) BS01 rna ? N/A B7MGC4 38500588
    859905 8vsa:L35 (3.7) BS01 rna ? N/A P0A7Q1 38500588
    859906 8vsa:L36 (3.7) BS01 rna ? N/A A0A0E2L017 38500588
    859907 8vsa:S02 (3.7) BS01 rna ? N/A C3TPN2 38500588
    859908 8vsa:S02 (3.7) BS02 rna ? N/A C3TPN2 38500588
    859909 8vsa:S03 (3.7) BS01 rna ? N/A B7MCS9 38500588
    859910 8vsa:S03 (3.7) BS02 rna ? N/A B7MCS9 38500588
    859911 8vsa:S04 (3.7) BS01 rna ? N/A P0A7V8 38500588
    859912 8vsa:S05 (3.7) BS01 rna ? N/A P0A7W1 38500588
    859913 8vsa:S05 (3.7) BS02 rna ? N/A P0A7W1 38500588
    859914 8vsa:S06 (3.7) BS01 rna ? N/A P02358 38500588
    859915 8vsa:S07 (3.7) BS01 rna ? N/A P02359 38500588
    859916 8vsa:S08 (3.7) BS01 rna ? N/A D7XKZ3 38500588
    859917 8vsa:S09 (3.7) BS01 rna ? N/A C3SRY2 38500588
    859918 8vsa:S10 (3.7) BS01 rna ? N/A V0ANK5 38500588
    859919 8vsa:S11 (3.7) BS01 rna ? N/A B7MCR3 38500588
    859920 8vsa:S12 (3.7) BS01 rna ? N/A P0A7S3 38500588
    859921 8vsa:S13 (3.7) BS01 rna ? N/A A0A7U9IV78 38500588
    859922 8vsa:S13 (3.7) BS02 rna ? N/A A0A7U9IV78 38500588
    859923 8vsa:S14 (3.7) BS01 rna ? N/A A0A2X1PQW4 38500588
    859924 8vsa:S15 (3.7) BS01 rna ? N/A C3SSQ7 38500588
    859925 8vsa:S15 (3.7) BS02 rna ? N/A C3SSQ7 38500588
    859926 8vsa:S16 (3.7) BS01 rna ? N/A C3SYP2 38500588
    859927 8vsa:S17 (3.7) BS01 rna ? N/A C3SQY7 38500588
    859928 8vsa:S18 (3.7) BS01 rna ? N/A A0A0E2KXL3 38500588
    859929 8vsa:S19 (3.7) BS01 rna ? N/A S1EA57 38500588
    859930 8vsa:S19 (3.7) BS02 rna ? N/A S1EA57 38500588
    859931 8vsa:S20 (3.7) BS01 rna ? N/A C3TRH7 38500588
    859932 8vsa:S21 (3.7) BS01 rna ? N/A A0A0E2L2J1 38500588
    859933 8vsa:SMPB (3.7) BS01 rna ? N/A A0A2X1N680 38500588
    859934 8vsa:SMPB (3.7) BS02 rna ? N/A A0A2X1N680 38500588
    859935 8vsa:SMPB (3.7) BS03 rna ? N/A A0A2X1N680 38500588
    859936 8vsg:A (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38518735
    859937 8vsg:B (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38518735
    859938 8vsh:A (2.0) BS01 A1ADT ? GO:0046872 ... A9DF82 N/A
    859939 8vsh:B (2.0) BS01 A1ADT ? GO:0046872 ... A9DF82 N/A
    859940 8vsh:C (2.0) BS01 A1ADT ? GO:0046872 ... A9DF82 N/A
    859941 8vsh:D (2.0) BS01 A1ADT ? GO:0046872 ... A9DF82 N/A
    859942 8vsi:A (3.1) BS01 MG 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    859943 8vsi:A (3.1) BS02 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    859944 8vsi:A (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    859945 8vsi:B (3.1) BS01 AOV 3.6.3.- N/A A0A376P7T7 38540742
    859946 8vsi:B (3.1) BS02 MG 3.6.3.- N/A A0A376P7T7 38540742
    859947 8vsi:B (3.1) BS03 AOV 3.6.3.- N/A A0A376P7T7 38540742
    859948 8vsw:A (-1.00) BS01 HTU N/A N/A N/A 38487244
    859949 8vsy:A (1.6) BS01 WSR N/A N/A N/A N/A
    859950 8vsy:B (1.6) BS01 WSR N/A N/A N/A N/A
    859951 8vt7:A (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    859952 8vt7:B (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    859953 8vt7:F (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    859954 8vt7:J (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    859955 8vtj:L (2.81) BS01 BCL ? GO:0015979 ... P0C0Y8 N/A
    859956 8vtj:L (2.81) BS02 BPH ? GO:0015979 ... P0C0Y8 N/A
    859957 8vtj:L (2.81) BS03 BCL ? GO:0015979 ... P0C0Y8 N/A
    859958 8vtj:L (2.81) BS04 FE ? GO:0015979 ... P0C0Y8 N/A
    859959 8vtj:L (2.81) BS05 BPH ? GO:0015979 ... P0C0Y8 N/A
    859960 8vtj:L (2.81) BS06 BCL ? GO:0015979 ... P0C0Y8 N/A
    859961 8vtj:M (2.81) BS01 BCL ? GO:0015979 ... P0C0Y9 N/A
    859962 8vtj:M (2.81) BS02 BPH ? GO:0015979 ... P0C0Y9 N/A
    859963 8vtj:M (2.81) BS03 BCL ? GO:0015979 ... P0C0Y9 N/A
    859964 8vtj:M (2.81) BS04 FE ? GO:0015979 ... P0C0Y9 N/A
    859965 8vtj:M (2.81) BS05 BPH ? GO:0015979 ... P0C0Y9 N/A
    859966 8vtj:M (2.81) BS06 SPO ? GO:0015979 ... P0C0Y9 N/A
    859967 8vtj:M (2.81) BS07 BCL ? GO:0015979 ... P0C0Y9 N/A
    859968 8vtk:L (3.07) BS01 BPH ? GO:0015979 ... P0C0Y8 N/A
    859969 8vtk:L (3.07) BS02 BCL ? GO:0015979 ... P0C0Y8 N/A
    859970 8vtk:L (3.07) BS03 BPH ? GO:0015979 ... P0C0Y8 N/A
    859971 8vtk:L (3.07) BS04 BCL ? GO:0015979 ... P0C0Y8 N/A
    859972 8vtk:L (3.07) BS05 BCL ? GO:0015979 ... P0C0Y8 N/A
    859973 8vtk:M (3.07) BS01 BPH ? GO:0015979 ... P0C0Y9 N/A
    859974 8vtk:M (3.07) BS02 BCL ? GO:0015979 ... P0C0Y9 N/A
    859975 8vtk:M (3.07) BS03 BPH ? GO:0015979 ... P0C0Y9 N/A
    859976 8vtk:M (3.07) BS04 BCL ? GO:0015979 ... P0C0Y9 N/A
    859977 8vtk:M (3.07) BS05 SPO ? GO:0015979 ... P0C0Y9 N/A
    859978 8vtk:M (3.07) BS06 BCL ? GO:0015979 ... P0C0Y9 N/A
    859979 8vtl:L (3.05) BS01 BPH ? GO:0015979 ... P0C0Y8 N/A
    859980 8vtl:L (3.05) BS02 BCL ? GO:0015979 ... P0C0Y8 N/A
    859981 8vtl:L (3.05) BS03 BCL ? GO:0015979 ... P0C0Y8 N/A
    859982 8vtl:L (3.05) BS04 FE ? GO:0015979 ... P0C0Y8 N/A
    859983 8vtl:L (3.05) BS05 BPH ? GO:0015979 ... P0C0Y8 N/A
    859984 8vtl:L (3.05) BS06 BCL ? GO:0015979 ... P0C0Y8 N/A
    859985 8vtl:M (3.05) BS01 BPH ? GO:0015979 ... P0C0Y9 N/A
    859986 8vtl:M (3.05) BS02 BCL ? GO:0015979 ... P0C0Y9 N/A
    859987 8vtl:M (3.05) BS03 BCL ? GO:0015979 ... P0C0Y9 N/A
    859988 8vtl:M (3.05) BS04 FE ? GO:0015979 ... P0C0Y9 N/A
    859989 8vtl:M (3.05) BS05 SPO ? GO:0015979 ... P0C0Y9 N/A
    859990 8vtl:M (3.05) BS06 BPH ? GO:0015979 ... P0C0Y9 N/A
    859991 8vtl:M (3.05) BS07 BCL ? GO:0015979 ... P0C0Y9 N/A
    859992 8vtm:L (3.51) BS01 BCL ? GO:0015979 ... P0C0Y8 N/A
    859993 8vtm:L (3.51) BS02 BCL ? GO:0015979 ... P0C0Y8 N/A
    859994 8vtm:L (3.51) BS03 FE ? GO:0015979 ... P0C0Y8 N/A
    859995 8vtm:L (3.51) BS04 BPH ? GO:0015979 ... P0C0Y8 N/A
    859996 8vtm:L (3.51) BS05 BPH ? GO:0015979 ... P0C0Y8 N/A
    859997 8vtm:L (3.51) BS06 BCL ? GO:0015979 ... P0C0Y8 N/A
    859998 8vtm:M (3.51) BS01 BCL ? GO:0015979 ... P0C0Y9 N/A
    859999 8vtm:M (3.51) BS02 BCL ? GO:0015979 ... P0C0Y9 N/A
    860000 8vtm:M (3.51) BS03 FE ? GO:0015979 ... P0C0Y9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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