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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 864790 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    861601 8wdv:W (2.24) BS02 CRT ? GO:0005886 ... D3RP74 N/A
    861602 8wdv:W (2.24) BS03 BCL ? GO:0005886 ... D3RP74 N/A
    861603 8wdv:W (2.24) BS04 CA ? GO:0005886 ... D3RP74 N/A
    861604 8wdv:W (2.24) BS05 BCL ? GO:0005886 ... D3RP74 N/A
    861605 8wdv:W (2.24) BS06 CRT ? GO:0005886 ... D3RP74 N/A
    861606 8wdv:W (2.24) BS07 CRT ? GO:0005886 ... D3RP74 N/A
    861607 8wdv:X (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861608 8wdv:X (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861609 8wdv:X (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861610 8wdv:Y (2.24) BS01 CRT ? GO:0005886 ... D3RP74 N/A
    861611 8wdv:Y (2.24) BS02 BCL ? GO:0005886 ... D3RP74 N/A
    861612 8wdv:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 N/A
    861613 8wdv:Y (2.24) BS04 BCL ? GO:0005886 ... D3RP74 N/A
    861614 8wdv:Y (2.24) BS05 CRT ? GO:0005886 ... D3RP74 N/A
    861615 8wdv:Y (2.24) BS06 CRT ? GO:0005886 ... D3RP74 N/A
    861616 8wdv:Z (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861617 8wdv:Z (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861618 8wdv:Z (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861619 8wdv:Z (2.24) BS04 BCL ? GO:0005886 ... D3RP68 N/A
    861620 8wdx:A (1.65) BS01 W6K ? GO:0005324 ... P15090 38043490
    861621 8we3:A (1.82) BS01 W6B ? GO:0005324 ... P15090 38043490
    861622 8we6:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    861623 8we6:A (2.9) BS02 CLR ? GO:0002520 ... Q13936 37972591
    861624 8we6:A (2.9) BS03 CLR ? GO:0002520 ... Q13936 37972591
    861625 8we6:A (2.9) BS04 CLR ? GO:0002520 ... Q13936 37972591
    861626 8we6:A (2.9) BS05 CLR ? GO:0002520 ... Q13936 37972591
    861627 8we6:A (2.9) BS06 PT5 ? GO:0002520 ... Q13936 37972591
    861628 8we6:D (2.9) BS01 CA ? N/A P54289 37972591
    861629 8we7:A (3.2) BS01 CA ? GO:0002520 ... Q13936 37972591
    861630 8we7:A (3.2) BS02 CLR ? GO:0002520 ... Q13936 37972591
    861631 8we7:A (3.2) BS03 CLR ? GO:0002520 ... Q13936 37972591
    861632 8we7:D (3.2) BS01 CA ? N/A P54289 37972591
    861633 8we8:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    861634 8we8:A (2.9) BS02 CLR ? GO:0002520 ... Q13936 37972591
    861635 8we8:A (2.9) BS03 CLR ? GO:0002520 ... Q13936 37972591
    861636 8we8:A (2.9) BS04 CLR ? GO:0002520 ... Q13936 37972591
    861637 8we8:A (2.9) BS05 CLR ? GO:0002520 ... Q13936 37972591
    861638 8we8:A (2.9) BS06 PT5 ? GO:0002520 ... Q13936 37972591
    861639 8we8:A (2.9) BS07 6UB ? GO:0002520 ... Q13936 37972591
    861640 8we8:A (2.9) BS08 CLR ? GO:0002520 ... Q13936 37972591
    861641 8we8:B (2.9) BS01 CLR ? GO:0005246 ... P22947 37972591
    861642 8we8:D (2.9) BS01 CA ? N/A P54289 37972591
    861643 8we9:A (3.0) BS01 CA ? GO:0002520 ... Q13936 37972591
    861644 8we9:A (3.0) BS02 CLR ? GO:0002520 ... Q13936 37972591
    861645 8we9:A (3.0) BS03 CLR ? GO:0002520 ... Q13936 37972591
    861646 8we9:A (3.0) BS04 CLR ? GO:0002520 ... Q13936 37972591
    861647 8we9:A (3.0) BS05 PT5 ? GO:0002520 ... Q13936 37972591
    861648 8we9:D (3.0) BS01 CA ? N/A P54289 37972591
    861649 8wea:A (3.2) BS01 9Z9 ? GO:0002520 ... Q13936 37972591
    861650 8wea:A (3.2) BS02 WB9 ? GO:0002520 ... Q13936 37972591
    861651 8wea:D (3.2) BS01 CA ? N/A P54289 37972591
    861652 8wej:B (2.79) BS01 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    861653 8wej:B (2.79) BS02 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    861654 8wej:B (2.79) BS03 NDP 1.-.-.- GO:0005515 ... P04839 38355798
    861655 8wej:B (2.79) BS04 FDA 1.-.-.- GO:0005515 ... P04839 38355798
    861656 8wej:E (2.79) BS01 peptide 3.6.5.2 GO:0003924 ... P63000 38355798
    861657 8wej:E (2.79) BS02 GTP 3.6.5.2 GO:0003924 ... P63000 38355798
    861658 8wej:E (2.79) BS03 MG 3.6.5.2 GO:0003924 ... P63000 38355798
    861659 8wey:1 (1.92) BS01 CLA N/A N/A N/A 38442179
    861660 8wey:1 (1.92) BS02 CLA N/A N/A N/A 38442179
    861661 8wey:1 (1.92) BS03 CLA N/A N/A N/A 38442179
    861662 8wey:1 (1.92) BS04 CLA N/A N/A N/A 38442179
    861663 8wey:1 (1.92) BS05 CLA N/A N/A N/A 38442179
    861664 8wey:1 (1.92) BS06 CLA N/A N/A N/A 38442179
    861665 8wey:1 (1.92) BS07 CLA N/A N/A N/A 38442179
    861666 8wey:1 (1.92) BS08 CLA N/A N/A N/A 38442179
    861667 8wey:1 (1.92) BS09 CLA N/A N/A N/A 38442179
    861668 8wey:1 (1.92) BS10 CLA N/A N/A N/A 38442179
    861669 8wey:1 (1.92) BS11 CLA N/A N/A N/A 38442179
    861670 8wey:1 (1.92) BS12 5X6 N/A N/A N/A 38442179
    861671 8wey:1 (1.92) BS13 5X6 N/A N/A N/A 38442179
    861672 8wey:1 (1.92) BS14 5X6 N/A N/A N/A 38442179
    861673 8wey:1 (1.92) BS15 5X6 N/A N/A N/A 38442179
    861674 8wey:1 (1.92) BS16 5X6 N/A N/A N/A 38442179
    861675 8wey:2 (1.92) BS01 CLA N/A N/A N/A 38442179
    861676 8wey:2 (1.92) BS02 5X6 N/A N/A N/A 38442179
    861677 8wey:2 (1.92) BS03 CLA N/A N/A N/A 38442179
    861678 8wey:2 (1.92) BS04 CLA N/A N/A N/A 38442179
    861679 8wey:2 (1.92) BS05 CLA N/A N/A N/A 38442179
    861680 8wey:2 (1.92) BS06 CLA N/A N/A N/A 38442179
    861681 8wey:2 (1.92) BS07 CLA N/A N/A N/A 38442179
    861682 8wey:2 (1.92) BS08 CLA N/A N/A N/A 38442179
    861683 8wey:2 (1.92) BS09 CLA N/A N/A N/A 38442179
    861684 8wey:2 (1.92) BS10 CLA N/A N/A N/A 38442179
    861685 8wey:2 (1.92) BS11 CLA N/A N/A N/A 38442179
    861686 8wey:2 (1.92) BS12 CLA N/A N/A N/A 38442179
    861687 8wey:2 (1.92) BS13 CLA N/A N/A N/A 38442179
    861688 8wey:2 (1.92) BS14 CLA N/A N/A N/A 38442179
    861689 8wey:2 (1.92) BS15 5X6 N/A N/A N/A 38442179
    861690 8wey:2 (1.92) BS16 5X6 N/A N/A N/A 38442179
    861691 8wey:2 (1.92) BS17 5X6 N/A N/A N/A 38442179
    861692 8wey:2 (1.92) BS18 5X6 N/A N/A N/A 38442179
    861693 8wey:2 (1.92) BS19 5X6 N/A N/A N/A 38442179
    861694 8wey:3 (1.92) BS01 CLA N/A N/A N/A 38442179
    861695 8wey:3 (1.92) BS02 CLA N/A N/A N/A 38442179
    861696 8wey:3 (1.92) BS03 CLA N/A N/A N/A 38442179
    861697 8wey:3 (1.92) BS04 CLA N/A N/A N/A 38442179
    861698 8wey:3 (1.92) BS05 CLA N/A N/A N/A 38442179
    861699 8wey:3 (1.92) BS06 CLA N/A N/A N/A 38442179
    861700 8wey:3 (1.92) BS07 CLA N/A N/A N/A 38442179
    861701 8wey:3 (1.92) BS08 CLA N/A N/A N/A 38442179
    861702 8wey:3 (1.92) BS09 CLA N/A N/A N/A 38442179
    861703 8wey:3 (1.92) BS10 CLA N/A N/A N/A 38442179
    861704 8wey:3 (1.92) BS11 CLA N/A N/A N/A 38442179
    861705 8wey:3 (1.92) BS12 5X6 N/A N/A N/A 38442179
    861706 8wey:3 (1.92) BS13 5X6 N/A N/A N/A 38442179
    861707 8wey:3 (1.92) BS14 5X6 N/A N/A N/A 38442179
    861708 8wey:4 (1.92) BS01 CLA N/A N/A N/A 38442179
    861709 8wey:4 (1.92) BS02 CLA N/A N/A N/A 38442179
    861710 8wey:4 (1.92) BS03 CLA N/A N/A N/A 38442179
    861711 8wey:4 (1.92) BS04 CLA N/A N/A N/A 38442179
    861712 8wey:4 (1.92) BS05 CLA N/A N/A N/A 38442179
    861713 8wey:4 (1.92) BS06 CLA N/A N/A N/A 38442179
    861714 8wey:4 (1.92) BS07 CLA N/A N/A N/A 38442179
    861715 8wey:4 (1.92) BS08 5X6 N/A N/A N/A 38442179
    861716 8wey:4 (1.92) BS09 5X6 N/A N/A N/A 38442179
    861717 8wey:4 (1.92) BS10 5X6 N/A N/A N/A 38442179
    861718 8wey:5 (1.92) BS01 CLA N/A N/A N/A 38442179
    861719 8wey:5 (1.92) BS02 CLA N/A N/A N/A 38442179
    861720 8wey:5 (1.92) BS03 5X6 N/A N/A N/A 38442179
    861721 8wey:5 (1.92) BS04 CLA N/A N/A N/A 38442179
    861722 8wey:5 (1.92) BS05 CLA N/A N/A N/A 38442179
    861723 8wey:5 (1.92) BS06 CLA N/A N/A N/A 38442179
    861724 8wey:5 (1.92) BS07 CLA N/A N/A N/A 38442179
    861725 8wey:5 (1.92) BS08 CLA N/A N/A N/A 38442179
    861726 8wey:5 (1.92) BS09 CLA N/A N/A N/A 38442179
    861727 8wey:5 (1.92) BS10 CLA N/A N/A N/A 38442179
    861728 8wey:5 (1.92) BS11 CLA N/A N/A N/A 38442179
    861729 8wey:5 (1.92) BS12 CLA N/A N/A N/A 38442179
    861730 8wey:5 (1.92) BS13 CLA N/A N/A N/A 38442179
    861731 8wey:5 (1.92) BS14 CLA N/A N/A N/A 38442179
    861732 8wey:5 (1.92) BS15 CLA N/A N/A N/A 38442179
    861733 8wey:5 (1.92) BS16 5X6 N/A N/A N/A 38442179
    861734 8wey:5 (1.92) BS17 5X6 N/A N/A N/A 38442179
    861735 8wey:5 (1.92) BS18 5X6 N/A N/A N/A 38442179
    861736 8wey:5 (1.92) BS19 5X6 N/A N/A N/A 38442179
    861737 8wey:A (1.92) BS01 CL0 N/A N/A N/A 38442179
    861738 8wey:A (1.92) BS02 CLA N/A N/A N/A 38442179
    861739 8wey:A (1.92) BS03 CLA N/A N/A N/A 38442179
    861740 8wey:A (1.92) BS04 CLA N/A N/A N/A 38442179
    861741 8wey:A (1.92) BS05 CLA N/A N/A N/A 38442179
    861742 8wey:A (1.92) BS06 CLA N/A N/A N/A 38442179
    861743 8wey:A (1.92) BS07 CLA N/A N/A N/A 38442179
    861744 8wey:A (1.92) BS08 CLA N/A N/A N/A 38442179
    861745 8wey:A (1.92) BS09 CLA N/A N/A N/A 38442179
    861746 8wey:A (1.92) BS10 CLA N/A N/A N/A 38442179
    861747 8wey:A (1.92) BS11 CLA N/A N/A N/A 38442179
    861748 8wey:A (1.92) BS12 CLA N/A N/A N/A 38442179
    861749 8wey:A (1.92) BS13 CLA N/A N/A N/A 38442179
    861750 8wey:A (1.92) BS14 CLA N/A N/A N/A 38442179
    861751 8wey:A (1.92) BS15 CLA N/A N/A N/A 38442179
    861752 8wey:A (1.92) BS16 CLA N/A N/A N/A 38442179
    861753 8wey:A (1.92) BS17 CLA N/A N/A N/A 38442179
    861754 8wey:A (1.92) BS18 CLA N/A N/A N/A 38442179
    861755 8wey:A (1.92) BS19 CLA N/A N/A N/A 38442179
    861756 8wey:A (1.92) BS20 CLA N/A N/A N/A 38442179
    861757 8wey:A (1.92) BS21 CLA N/A N/A N/A 38442179
    861758 8wey:A (1.92) BS22 CLA N/A N/A N/A 38442179
    861759 8wey:A (1.92) BS23 CLA N/A N/A N/A 38442179
    861760 8wey:A (1.92) BS24 CLA N/A N/A N/A 38442179
    861761 8wey:A (1.92) BS25 CLA N/A N/A N/A 38442179
    861762 8wey:A (1.92) BS26 CLA N/A N/A N/A 38442179
    861763 8wey:A (1.92) BS27 CLA N/A N/A N/A 38442179
    861764 8wey:A (1.92) BS28 CLA N/A N/A N/A 38442179
    861765 8wey:A (1.92) BS29 CLA N/A N/A N/A 38442179
    861766 8wey:A (1.92) BS30 CLA N/A N/A N/A 38442179
    861767 8wey:A (1.92) BS31 CLA N/A N/A N/A 38442179
    861768 8wey:A (1.92) BS32 CLA N/A N/A N/A 38442179
    861769 8wey:A (1.92) BS33 CLA N/A N/A N/A 38442179
    861770 8wey:A (1.92) BS34 CLA N/A N/A N/A 38442179
    861771 8wey:A (1.92) BS35 CLA N/A N/A N/A 38442179
    861772 8wey:A (1.92) BS36 CLA N/A N/A N/A 38442179
    861773 8wey:A (1.92) BS37 CLA N/A N/A N/A 38442179
    861774 8wey:A (1.92) BS38 CLA N/A N/A N/A 38442179
    861775 8wey:A (1.92) BS39 CLA N/A N/A N/A 38442179
    861776 8wey:A (1.92) BS40 PQN N/A N/A N/A 38442179
    861777 8wey:A (1.92) BS41 SF4 N/A N/A N/A 38442179
    861778 8wey:A (1.92) BS42 CLA N/A N/A N/A 38442179
    861779 8wey:A (1.92) BS43 CLA N/A N/A N/A 38442179
    861780 8wey:A (1.92) BS44 CLA N/A N/A N/A 38442179
    861781 8wey:A (1.92) BS45 CLA N/A N/A N/A 38442179
    861782 8wey:A (1.92) BS46 CLA N/A N/A N/A 38442179
    861783 8wey:A (1.92) BS47 CLA N/A N/A N/A 38442179
    861784 8wey:A (1.92) BS48 CLA N/A N/A N/A 38442179
    861785 8wey:A (1.92) BS49 CLA N/A N/A N/A 38442179
    861786 8wey:A (1.92) BS50 CLA N/A N/A N/A 38442179
    861787 8wey:A (1.92) BS51 CLA N/A N/A N/A 38442179
    861788 8wey:A (1.92) BS52 CLA N/A N/A N/A 38442179
    861789 8wey:A (1.92) BS53 CLA N/A N/A N/A 38442179
    861790 8wey:B (1.92) BS01 peptide N/A N/A N/A 38442179
    861791 8wey:B (1.92) BS02 CL0 N/A N/A N/A 38442179
    861792 8wey:B (1.92) BS03 CLA N/A N/A N/A 38442179
    861793 8wey:B (1.92) BS04 CLA N/A N/A N/A 38442179
    861794 8wey:B (1.92) BS05 CLA N/A N/A N/A 38442179
    861795 8wey:B (1.92) BS06 SF4 N/A N/A N/A 38442179
    861796 8wey:B (1.92) BS07 CLA N/A N/A N/A 38442179
    861797 8wey:B (1.92) BS08 CLA N/A N/A N/A 38442179
    861798 8wey:B (1.92) BS09 CLA N/A N/A N/A 38442179
    861799 8wey:B (1.92) BS10 CLA N/A N/A N/A 38442179
    861800 8wey:B (1.92) BS11 CLA N/A N/A N/A 38442179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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