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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 864790 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    860201 8w3a:B (1.8) BS02 HEM ? GO:0046872 ... A9DF82 N/A
    860202 8w3a:C (1.8) BS01 A1ADT ? GO:0046872 ... A9DF82 N/A
    860203 8w3a:C (1.8) BS02 HEM ? GO:0046872 ... A9DF82 N/A
    860204 8w3a:D (1.8) BS01 A1ADT ? GO:0046872 ... A9DF82 N/A
    860205 8w3a:D (1.8) BS02 HEM ? GO:0046872 ... A9DF82 N/A
    860206 8w3w:A (1.976) BS01 A1AFO 2.7.11.1 N/A Q9NWZ3 38628800
    860207 8w3w:B (1.976) BS01 A1AFO 2.7.11.1 N/A Q9NWZ3 38628800
    860208 8w3w:C (1.976) BS01 A1AFO 2.7.11.1 N/A Q9NWZ3 38628800
    860209 8w3w:D (1.976) BS01 A1AFO 2.7.11.1 N/A Q9NWZ3 38628800
    860210 8w3x:A (1.765) BS01 A1AFH 2.7.11.1 N/A Q9NWZ3 38628800
    860211 8w3x:B (1.765) BS01 A1AFH 2.7.11.1 N/A Q9NWZ3 38628800
    860212 8w3x:C (1.765) BS01 A1AFH 2.7.11.1 N/A Q9NWZ3 38628800
    860213 8w3x:D (1.765) BS01 A1AFH 2.7.11.1 N/A Q9NWZ3 38628800
    860214 8w41:A (3.54) BS01 ADP ? GO:0000146 ... Q9UM54 N/A
    860215 8w41:B (3.54) BS01 CA ? GO:0000086 ... P0DP26 N/A
    860216 8w41:B (3.54) BS02 CA ? GO:0000086 ... P0DP26 N/A
    860217 8w41:B (3.54) BS03 CA ? GO:0000086 ... P0DP26 N/A
    860218 8w41:B (3.54) BS04 CA ? GO:0000086 ... P0DP26 N/A
    860219 8w42:A (1.45) BS01 STL ? N/A P02766 37910439
    860220 8w42:B (1.45) BS01 STL ? N/A P02766 37910439
    860221 8w43:A (1.302) BS01 PIT ? N/A P02766 37910439
    860222 8w43:B (1.302) BS01 PIT ? N/A P02766 37910439
    860223 8w44:A (1.399) BS01 EZE ? N/A P02766 37910439
    860224 8w44:B (1.399) BS01 EZE ? N/A P02766 37910439
    860225 8w44:B (1.399) BS02 EZE ? N/A P02766 37910439
    860226 8w45:A (1.1) BS01 8KZ ? N/A P02766 37910439
    860227 8w45:B (1.1) BS01 8KZ ? N/A P02766 37910439
    860228 8w46:A (1.35) BS01 3RL ? N/A P02766 37910439
    860229 8w46:B (1.35) BS01 3RL ? N/A P02766 37910439
    860230 8w46:B (1.35) BS02 3RL ? N/A P02766 37910439
    860231 8w47:A (1.4) BS01 P5O ? N/A P02766 37910439
    860232 8w47:B (1.4) BS01 P5O ? N/A P02766 37910439
    860233 8w48:A (1.19) BS01 PIT ? N/A P02766 37910439
    860234 8w48:B (1.19) BS01 PIT ? N/A P02766 37910439
    860235 8w4o:5 (3.23) BS01 ET4 ? GO:0009416 ... B5YLU3 38071196
    860236 8w4o:5 (3.23) BS02 A86 ? GO:0009416 ... B5YLU3 38071196
    860237 8w4o:5 (3.23) BS03 CLA ? GO:0009416 ... B5YLU3 38071196
    860238 8w4o:5 (3.23) BS04 CLA ? GO:0009416 ... B5YLU3 38071196
    860239 8w4o:5 (3.23) BS05 CLA ? GO:0009416 ... B5YLU3 38071196
    860240 8w4o:5 (3.23) BS06 CLA ? GO:0009416 ... B5YLU3 38071196
    860241 8w4o:5 (3.23) BS07 CLA ? GO:0009416 ... B5YLU3 38071196
    860242 8w4o:5 (3.23) BS08 CLA ? GO:0009416 ... B5YLU3 38071196
    860243 8w4o:5 (3.23) BS09 CLA ? GO:0009416 ... B5YLU3 38071196
    860244 8w4o:5 (3.23) BS10 CLA ? GO:0009416 ... B5YLU3 38071196
    860245 8w4o:5 (3.23) BS11 CLA ? GO:0009416 ... B5YLU3 38071196
    860246 8w4o:6 (3.23) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    860247 8w4o:6 (3.23) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    860248 8w4o:6 (3.23) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    860249 8w4o:6 (3.23) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    860250 8w4o:6 (3.23) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    860251 8w4o:6 (3.23) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    860252 8w4o:6 (3.23) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    860253 8w4o:6 (3.23) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    860254 8w4o:6 (3.23) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    860255 8w4o:6 (3.23) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    860256 8w4o:6 (3.23) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    860257 8w4o:6 (3.23) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    860258 8w4o:6 (3.23) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    860259 8w4o:6 (3.23) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    860260 8w4o:6 (3.23) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    860261 8w4o:6 (3.23) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    860262 8w4o:6 (3.23) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    860263 8w4o:7 (3.23) BS01 A86 N/A GO:0009765 ... N/A 38071196
    860264 8w4o:7 (3.23) BS02 A86 N/A GO:0009765 ... N/A 38071196
    860265 8w4o:7 (3.23) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    860266 8w4o:7 (3.23) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    860267 8w4o:7 (3.23) BS05 CLA N/A GO:0009765 ... N/A 38071196
    860268 8w4o:7 (3.23) BS06 CLA N/A GO:0009765 ... N/A 38071196
    860269 8w4o:7 (3.23) BS07 CLA N/A GO:0009765 ... N/A 38071196
    860270 8w4o:7 (3.23) BS08 CLA N/A GO:0009765 ... N/A 38071196
    860271 8w4o:7 (3.23) BS09 CLA N/A GO:0009765 ... N/A 38071196
    860272 8w4o:7 (3.23) BS10 CLA N/A GO:0009765 ... N/A 38071196
    860273 8w4o:7 (3.23) BS11 CLA N/A GO:0009765 ... N/A 38071196
    860274 8w4o:7 (3.23) BS12 CLA N/A GO:0009765 ... N/A 38071196
    860275 8w4o:7 (3.23) BS13 CLA N/A GO:0009765 ... N/A 38071196
    860276 8w4o:7 (3.23) BS14 CLA N/A GO:0009765 ... N/A 38071196
    860277 8w4o:7 (3.23) BS15 CLA N/A GO:0009765 ... N/A 38071196
    860278 8w4o:7 (3.23) BS16 CLA N/A GO:0009765 ... N/A 38071196
    860279 8w4o:7 (3.23) BS17 CLA N/A GO:0009765 ... N/A 38071196
    860280 8w4o:7 (3.23) BS18 CLA N/A GO:0009765 ... N/A 38071196
    860281 8w4p:3 (3.48) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    860282 8w4p:3 (3.48) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    860283 8w4p:3 (3.48) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    860284 8w4p:3 (3.48) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    860285 8w4p:3 (3.48) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    860286 8w4p:3 (3.48) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    860287 8w4p:3 (3.48) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    860288 8w4p:3 (3.48) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    860289 8w4p:3 (3.48) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    860290 8w4p:3 (3.48) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    860291 8w4p:3 (3.48) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    860292 8w4p:4 (3.48) BS01 A86 N/A N/A N/A 38071196
    860293 8w4p:4 (3.48) BS02 A86 N/A N/A N/A 38071196
    860294 8w4p:4 (3.48) BS03 CLA N/A N/A N/A 38071196
    860295 8w4p:4 (3.48) BS04 CLA N/A N/A N/A 38071196
    860296 8w4p:4 (3.48) BS05 CLA N/A N/A N/A 38071196
    860297 8w4p:4 (3.48) BS06 CLA N/A N/A N/A 38071196
    860298 8w4p:4 (3.48) BS07 CLA N/A N/A N/A 38071196
    860299 8w4p:4 (3.48) BS08 CLA N/A N/A N/A 38071196
    860300 8w4p:4 (3.48) BS09 CLA N/A N/A N/A 38071196
    860301 8w4p:p (3.48) BS01 CLA ? GO:0009416 ... B8BUU4 38071196
    860302 8w4p:p (3.48) BS02 CLA ? GO:0009416 ... B8BUU4 38071196
    860303 8w4p:p (3.48) BS03 CLA ? GO:0009416 ... B8BUU4 38071196
    860304 8w4p:p (3.48) BS04 CLA ? GO:0009416 ... B8BUU4 38071196
    860305 8w4p:p (3.48) BS05 CLA ? GO:0009416 ... B8BUU4 38071196
    860306 8w4p:p (3.48) BS06 CLA ? GO:0009416 ... B8BUU4 38071196
    860307 8w4p:p (3.48) BS07 CLA ? GO:0009416 ... B8BUU4 38071196
    860308 8w4p:p (3.48) BS08 CLA ? GO:0009416 ... B8BUU4 38071196
    860309 8w4p:p (3.48) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    860310 8w4p:p (3.48) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    860311 8w4q:A (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    860312 8w4q:A (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    860313 8w4q:B (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    860314 8w4q:B (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    860315 8w4r:A (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    860316 8w4r:A (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    860317 8w4r:B (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    860318 8w4r:B (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    860319 8w4s:A (1.848) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    860320 8w4s:A (1.848) BS02 AJR 3.1.4.35 GO:0004114 ... O76074 37918035
    860321 8w4t:A (2.199) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    860322 8w4t:A (2.199) BS02 VZF 3.1.4.35 GO:0004114 ... O76074 37918035
    860323 8w4u:A (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    860324 8w4u:A (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    860325 8w4u:B (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    860326 8w4u:B (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    860327 8w4u:D (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    860328 8w4u:D (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    860329 8w4u:G (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    860330 8w4u:G (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    860331 8w4v:A (1.81) BS01 Q9O 3.6.4.10 N/A P07900 N/A
    860332 8w59:A (1.339) BS01 ZN 2.3.2.27 N/A P98170 N/A
    860333 8w59:A (1.339) BS02 ZN 2.3.2.27 N/A P98170 N/A
    860334 8w59:B (1.339) BS01 ZN 2.3.2.27 N/A P98170 N/A
    860335 8w59:B (1.339) BS02 ZN 2.3.2.27 N/A P98170 N/A
    860336 8w5a:A (1.65) BS01 ZN 2.3.2.27 N/A P98170 N/A
    860337 8w5a:A (1.65) BS02 ZN 2.3.2.27 N/A P98170 N/A
    860338 8w5a:B (1.65) BS01 ZN 2.3.2.27 N/A P98170 N/A
    860339 8w5a:B (1.65) BS02 ZN 2.3.2.27 N/A P98170 N/A
    860340 8w5k:F (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    860341 8w5k:I (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    860342 8w5z:A (1.55) BS01 peptide 2.8.2.20 GO:0005794 ... A0A147BHN3 38354785
    860343 8w5z:A (1.55) BS02 A3P 2.8.2.20 GO:0005794 ... A0A147BHN3 38354785
    860344 8w5z:A (1.55) BS03 1PS 2.8.2.20 GO:0005794 ... A0A147BHN3 38354785
    860345 8w5z:A (1.55) BS04 1PS 2.8.2.20 GO:0005794 ... A0A147BHN3 38354785
    860346 8w5z:A (1.55) BS05 1PS 2.8.2.20 GO:0005794 ... A0A147BHN3 38354785
    860347 8w5z:A (1.55) BS06 1PS 2.8.2.20 GO:0005794 ... A0A147BHN3 38354785
    860348 8w5z:C (1.55) BS01 peptide 2.8.2.20 GO:0005794 ... A0A147BHN3 38354785
    860349 8w5z:C (1.55) BS02 peptide 2.8.2.20 GO:0005794 ... A0A147BHN3 38354785
    860350 8w5z:C (1.55) BS03 A3P 2.8.2.20 GO:0005794 ... A0A147BHN3 38354785
    860351 8w6c:A (2.7) BS01 NA ? N/A Q13183 38552027
    860352 8w6c:A (2.7) BS02 NA ? N/A Q13183 38552027
    860353 8w6c:A (2.7) BS03 Y01 ? N/A Q13183 38552027
    860354 8w6c:B (2.7) BS01 Y01 ? N/A Q13183 38552027
    860355 8w6c:B (2.7) BS02 Y01 ? N/A Q13183 38552027
    860356 8w6c:B (2.7) BS03 NA ? N/A Q13183 38552027
    860357 8w6c:B (2.7) BS04 NA ? N/A Q13183 38552027
    860358 8w6d:A (2.5) BS01 NA ? N/A Q13183 38552027
    860359 8w6d:A (2.5) BS02 Y01 ? N/A Q13183 38552027
    860360 8w6d:B (2.5) BS01 NA ? N/A Q13183 38552027
    860361 8w6d:B (2.5) BS02 Y01 ? N/A Q13183 38552027
    860362 8w6g:A (3.3) BS01 VIJ ? N/A Q13183 38552027
    860363 8w6g:A (3.3) BS02 Y01 ? N/A Q13183 38552027
    860364 8w6g:B (3.3) BS01 VIJ ? N/A Q13183 38552027
    860365 8w6g:B (3.3) BS02 Y01 ? N/A Q13183 38552027
    860366 8w6h:A (3.1) BS01 SO4 ? N/A Q9BZW2 38552027
    860367 8w6h:A (3.1) BS02 NA ? N/A Q9BZW2 38552027
    860368 8w6h:A (3.1) BS03 CLR ? N/A Q9BZW2 38552027
    860369 8w6h:B (3.1) BS01 SO4 ? N/A Q9BZW2 38552027
    860370 8w6h:B (3.1) BS02 NA ? N/A Q9BZW2 38552027
    860371 8w6h:B (3.1) BS03 CLR ? N/A Q9BZW2 38552027
    860372 8w6i:B (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    860373 8w6i:B (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    860374 8w6i:D (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    860375 8w6i:D (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    860376 8w6j:B (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    860377 8w6j:B (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    860378 8w6j:D (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    860379 8w6j:D (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    860380 8w6n:A (3.2) BS01 NA ? N/A Q9BZW2 38552027
    860381 8w6n:B (3.2) BS01 SO4 ? N/A Q9BZW2 38552027
    860382 8w6o:A (2.9) BS01 NA ? N/A Q9BZW2 38552027
    860383 8w6o:A (2.9) BS02 NA ? N/A Q9BZW2 38552027
    860384 8w6o:A (2.9) BS03 CLR ? N/A Q9BZW2 38552027
    860385 8w6o:B (2.9) BS01 NA ? N/A Q9BZW2 38552027
    860386 8w6o:B (2.9) BS02 NA ? N/A Q9BZW2 38552027
    860387 8w6o:B (2.9) BS03 CLR ? N/A Q9BZW2 38552027
    860388 8w6p:A (1.91) BS01 FUC 3.1.4.- GO:0004767 ... P70158 37890481
    860389 8w6p:A (1.91) BS02 YA4 3.1.4.- GO:0004767 ... P70158 37890481
    860390 8w6p:A (1.91) BS03 ZN 3.1.4.- GO:0004767 ... P70158 37890481
    860391 8w6p:A (1.91) BS04 ZN 3.1.4.- GO:0004767 ... P70158 37890481
    860392 8w6p:B (1.91) BS01 PO4 3.1.4.- GO:0004767 ... P70158 37890481
    860393 8w6p:B (1.91) BS02 ZN 3.1.4.- GO:0004767 ... P70158 37890481
    860394 8w6p:B (1.91) BS03 ZN 3.1.4.- GO:0004767 ... P70158 37890481
    860395 8w6r:A (1.95) BS01 ZN 3.1.4.- GO:0004767 ... P70158 37890481
    860396 8w6r:A (1.95) BS02 ZN 3.1.4.- GO:0004767 ... P70158 37890481
    860397 8w6x:L (1.04) BS01 NFU 1.12.2.1 GO:0016491 ... P21852 37712026
    860398 8w6x:L (1.04) BS02 MG 1.12.2.1 GO:0016491 ... P21852 37712026
    860399 8w6x:L (1.04) BS03 SF4 1.12.2.1 GO:0016491 ... P21852 37712026
    860400 8w6x:S (1.04) BS01 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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