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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 864790 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    861401 8wdu:O (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861402 8wdu:P (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861403 8wdu:P (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861404 8wdu:P (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861405 8wdu:Q (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861406 8wdu:Q (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861407 8wdu:Q (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861408 8wdu:Q (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861409 8wdu:Q (2.24) BS05 BCL ? GO:0005886 ... D3RP69 N/A
    861410 8wdu:Q (2.24) BS06 CRT ? GO:0005886 ... D3RP69 N/A
    861411 8wdu:R (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861412 8wdu:R (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861413 8wdu:R (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861414 8wdu:S (2.24) BS01 CRT ? GO:0005886 ... D3RP74 N/A
    861415 8wdu:S (2.24) BS02 BCL ? GO:0005886 ... D3RP74 N/A
    861416 8wdu:S (2.24) BS03 CA ? GO:0005886 ... D3RP74 N/A
    861417 8wdu:S (2.24) BS04 BCL ? GO:0005886 ... D3RP74 N/A
    861418 8wdu:S (2.24) BS05 CRT ? GO:0005886 ... D3RP74 N/A
    861419 8wdu:S (2.24) BS06 CRT ? GO:0005886 ... D3RP74 N/A
    861420 8wdu:T (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861421 8wdu:T (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861422 8wdu:T (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861423 8wdu:U (2.24) BS01 UQ8 ? GO:0005886 ... D3RP74 N/A
    861424 8wdu:U (2.24) BS02 CRT ? GO:0005886 ... D3RP74 N/A
    861425 8wdu:U (2.24) BS03 BCL ? GO:0005886 ... D3RP74 N/A
    861426 8wdu:U (2.24) BS04 CA ? GO:0005886 ... D3RP74 N/A
    861427 8wdu:U (2.24) BS05 BCL ? GO:0005886 ... D3RP74 N/A
    861428 8wdu:U (2.24) BS06 CRT ? GO:0005886 ... D3RP74 N/A
    861429 8wdu:U (2.24) BS07 CRT ? GO:0005886 ... D3RP74 N/A
    861430 8wdu:V (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861431 8wdu:V (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861432 8wdu:V (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861433 8wdu:W (2.24) BS01 UQ8 ? GO:0005886 ... D3RP74 N/A
    861434 8wdu:W (2.24) BS02 CRT ? GO:0005886 ... D3RP74 N/A
    861435 8wdu:W (2.24) BS03 BCL ? GO:0005886 ... D3RP74 N/A
    861436 8wdu:W (2.24) BS04 CA ? GO:0005886 ... D3RP74 N/A
    861437 8wdu:W (2.24) BS05 BCL ? GO:0005886 ... D3RP74 N/A
    861438 8wdu:W (2.24) BS06 CRT ? GO:0005886 ... D3RP74 N/A
    861439 8wdu:W (2.24) BS07 CRT ? GO:0005886 ... D3RP74 N/A
    861440 8wdu:X (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861441 8wdu:X (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861442 8wdu:X (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861443 8wdu:Y (2.24) BS01 CRT ? GO:0005886 ... D3RP74 N/A
    861444 8wdu:Y (2.24) BS02 BCL ? GO:0005886 ... D3RP74 N/A
    861445 8wdu:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 N/A
    861446 8wdu:Y (2.24) BS04 BCL ? GO:0005886 ... D3RP74 N/A
    861447 8wdu:Y (2.24) BS05 CRT ? GO:0005886 ... D3RP74 N/A
    861448 8wdu:Y (2.24) BS06 BCL ? GO:0005886 ... D3RP74 N/A
    861449 8wdu:Y (2.24) BS07 CRT ? GO:0005886 ... D3RP74 N/A
    861450 8wdu:Z (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861451 8wdu:Z (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861452 8wdu:Z (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861453 8wdv:0 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861454 8wdv:0 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861455 8wdv:0 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861456 8wdv:1 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861457 8wdv:1 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861458 8wdv:1 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861459 8wdv:1 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861460 8wdv:1 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861461 8wdv:2 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861462 8wdv:2 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861463 8wdv:2 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861464 8wdv:3 (2.24) BS01 CRT ? GO:0005886 ... D3RP67 N/A
    861465 8wdv:3 (2.24) BS02 BCL ? GO:0005886 ... D3RP67 N/A
    861466 8wdv:3 (2.24) BS03 BCL ? GO:0005886 ... D3RP67 N/A
    861467 8wdv:3 (2.24) BS04 CRT ? GO:0005886 ... D3RP67 N/A
    861468 8wdv:3 (2.24) BS05 BCL ? GO:0005886 ... D3RP67 N/A
    861469 8wdv:4 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861470 8wdv:4 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861471 8wdv:4 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861472 8wdv:5 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861473 8wdv:5 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861474 8wdv:5 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861475 8wdv:5 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861476 8wdv:6 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861477 8wdv:6 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861478 8wdv:6 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861479 8wdv:7 (2.24) BS01 UQ8 ? GO:0005886 ... D3RP69 N/A
    861480 8wdv:7 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 N/A
    861481 8wdv:7 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861482 8wdv:7 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 N/A
    861483 8wdv:7 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861484 8wdv:7 (2.24) BS06 CRT ? GO:0005886 ... D3RP69 N/A
    861485 8wdv:8 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861486 8wdv:8 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861487 8wdv:8 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861488 8wdv:9 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861489 8wdv:9 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 N/A
    861490 8wdv:9 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861491 8wdv:9 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 N/A
    861492 8wdv:9 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861493 8wdv:A (2.24) BS01 BCL ? GO:0005886 ... D3RP69 N/A
    861494 8wdv:A (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861495 8wdv:A (2.24) BS03 CRT ? GO:0005886 ... D3RP69 N/A
    861496 8wdv:A (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861497 8wdv:A (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861498 8wdv:B (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861499 8wdv:B (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861500 8wdv:B (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861501 8wdv:C (2.24) BS01 HEM ? N/A O82947 N/A
    861502 8wdv:C (2.24) BS02 HEM ? N/A O82947 N/A
    861503 8wdv:C (2.24) BS03 HEM ? N/A O82947 N/A
    861504 8wdv:C (2.24) BS04 HEM ? N/A O82947 N/A
    861505 8wdv:C (2.24) BS05 MG ? N/A O82947 N/A
    861506 8wdv:C (2.24) BS06 Z41 ? N/A O82947 N/A
    861507 8wdv:D (2.24) BS01 CRT ? GO:0005886 ... D3RP74 N/A
    861508 8wdv:D (2.24) BS02 BCL ? GO:0005886 ... D3RP74 N/A
    861509 8wdv:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 N/A
    861510 8wdv:D (2.24) BS04 BCL ? GO:0005886 ... D3RP74 N/A
    861511 8wdv:D (2.24) BS05 CRT ? GO:0005886 ... D3RP74 N/A
    861512 8wdv:D (2.24) BS06 CRT ? GO:0005886 ... D3RP74 N/A
    861513 8wdv:E (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861514 8wdv:E (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861515 8wdv:E (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861516 8wdv:F (2.24) BS01 CRT ? GO:0005886 ... D3RP74 N/A
    861517 8wdv:F (2.24) BS02 BCL ? GO:0005886 ... D3RP74 N/A
    861518 8wdv:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 N/A
    861519 8wdv:F (2.24) BS04 BCL ? GO:0005886 ... D3RP74 N/A
    861520 8wdv:F (2.24) BS05 CRT ? GO:0005886 ... D3RP74 N/A
    861521 8wdv:F (2.24) BS06 BCL ? GO:0005886 ... D3RP74 N/A
    861522 8wdv:F (2.24) BS07 CRT ? GO:0005886 ... D3RP74 N/A
    861523 8wdv:G (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861524 8wdv:G (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861525 8wdv:G (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861526 8wdv:I (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861527 8wdv:I (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861528 8wdv:I (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861529 8wdv:I (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861530 8wdv:I (2.24) BS05 BCL ? GO:0005886 ... D3RP69 N/A
    861531 8wdv:I (2.24) BS06 CRT ? GO:0005886 ... D3RP69 N/A
    861532 8wdv:J (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861533 8wdv:J (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861534 8wdv:J (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861535 8wdv:K (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861536 8wdv:K (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861537 8wdv:K (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861538 8wdv:K (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861539 8wdv:K (2.24) BS05 BCL ? GO:0005886 ... D3RP69 N/A
    861540 8wdv:K (2.24) BS06 CRT ? GO:0005886 ... D3RP69 N/A
    861541 8wdv:L (2.24) BS01 Z41 ? GO:0015979 ... P51762 N/A
    861542 8wdv:L (2.24) BS02 BCL ? GO:0015979 ... P51762 N/A
    861543 8wdv:L (2.24) BS03 BPH ? GO:0015979 ... P51762 N/A
    861544 8wdv:L (2.24) BS04 UQ8 ? GO:0015979 ... P51762 N/A
    861545 8wdv:L (2.24) BS05 UQ8 ? GO:0015979 ... P51762 N/A
    861546 8wdv:L (2.24) BS06 BCL ? GO:0015979 ... P51762 N/A
    861547 8wdv:L (2.24) BS07 UQ8 ? GO:0015979 ... P51762 N/A
    861548 8wdv:L (2.24) BS08 FE ? GO:0015979 ... P51762 N/A
    861549 8wdv:L (2.24) BS09 BCL ? GO:0015979 ... P51762 N/A
    861550 8wdv:L (2.24) BS10 BPH ? GO:0015979 ... P51762 N/A
    861551 8wdv:L (2.24) BS11 MQ8 ? GO:0015979 ... P51762 N/A
    861552 8wdv:M (2.24) BS01 BPH ? GO:0015979 ... P51763 N/A
    861553 8wdv:M (2.24) BS02 BCL ? GO:0015979 ... P51763 N/A
    861554 8wdv:M (2.24) BS03 UQ8 ? GO:0015979 ... P51763 N/A
    861555 8wdv:M (2.24) BS04 FE ? GO:0015979 ... P51763 N/A
    861556 8wdv:M (2.24) BS05 BCL ? GO:0015979 ... P51763 N/A
    861557 8wdv:M (2.24) BS06 BCL ? GO:0015979 ... P51763 N/A
    861558 8wdv:M (2.24) BS07 BPH ? GO:0015979 ... P51763 N/A
    861559 8wdv:M (2.24) BS08 MQ8 ? GO:0015979 ... P51763 N/A
    861560 8wdv:M (2.24) BS09 CRT ? GO:0015979 ... P51763 N/A
    861561 8wdv:N (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861562 8wdv:N (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861563 8wdv:N (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861564 8wdv:O (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861565 8wdv:O (2.24) BS02 CRT ? GO:0005886 ... D3RP69 N/A
    861566 8wdv:O (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861567 8wdv:O (2.24) BS04 BCL ? GO:0005886 ... D3RP69 N/A
    861568 8wdv:O (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861569 8wdv:O (2.24) BS06 CRT ? GO:0005886 ... D3RP69 N/A
    861570 8wdv:P (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861571 8wdv:P (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861572 8wdv:P (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861573 8wdv:Q (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861574 8wdv:Q (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861575 8wdv:Q (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861576 8wdv:Q (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861577 8wdv:Q (2.24) BS05 BCL ? GO:0005886 ... D3RP69 N/A
    861578 8wdv:Q (2.24) BS06 CRT ? GO:0005886 ... D3RP69 N/A
    861579 8wdv:R (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861580 8wdv:R (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861581 8wdv:R (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861582 8wdv:S (2.24) BS01 CRT ? GO:0005886 ... D3RP74 N/A
    861583 8wdv:S (2.24) BS02 BCL ? GO:0005886 ... D3RP74 N/A
    861584 8wdv:S (2.24) BS03 CA ? GO:0005886 ... D3RP74 N/A
    861585 8wdv:S (2.24) BS04 BCL ? GO:0005886 ... D3RP74 N/A
    861586 8wdv:S (2.24) BS05 CRT ? GO:0005886 ... D3RP74 N/A
    861587 8wdv:S (2.24) BS06 CRT ? GO:0005886 ... D3RP74 N/A
    861588 8wdv:T (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861589 8wdv:T (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861590 8wdv:T (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861591 8wdv:U (2.24) BS01 CRT ? GO:0005886 ... D3RP74 N/A
    861592 8wdv:U (2.24) BS02 BCL ? GO:0005886 ... D3RP74 N/A
    861593 8wdv:U (2.24) BS03 CA ? GO:0005886 ... D3RP74 N/A
    861594 8wdv:U (2.24) BS04 BCL ? GO:0005886 ... D3RP74 N/A
    861595 8wdv:U (2.24) BS05 CRT ? GO:0005886 ... D3RP74 N/A
    861596 8wdv:U (2.24) BS06 CRT ? GO:0005886 ... D3RP74 N/A
    861597 8wdv:V (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861598 8wdv:V (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861599 8wdv:V (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861600 8wdv:W (2.24) BS01 UQ8 ? GO:0005886 ... D3RP74 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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