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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 864790 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    860001 8vtm:M (3.51) BS04 BPH ? GO:0015979 ... P0C0Y9 N/A
    860002 8vtm:M (3.51) BS05 SPO ? GO:0015979 ... P0C0Y9 N/A
    860003 8vtm:M (3.51) BS06 BPH ? GO:0015979 ... P0C0Y9 N/A
    860004 8vtm:M (3.51) BS07 BCL ? GO:0015979 ... P0C0Y9 N/A
    860005 8vtn:L (3.57) BS01 BCL ? GO:0015979 ... P0C0Y8 N/A
    860006 8vtn:L (3.57) BS02 BCL ? GO:0015979 ... P0C0Y8 N/A
    860007 8vtn:L (3.57) BS03 FE ? GO:0015979 ... P0C0Y8 N/A
    860008 8vtn:L (3.57) BS04 BPH ? GO:0015979 ... P0C0Y8 N/A
    860009 8vtn:L (3.57) BS05 BPH ? GO:0015979 ... P0C0Y8 N/A
    860010 8vtn:L (3.57) BS06 BCL ? GO:0015979 ... P0C0Y8 N/A
    860011 8vtn:M (3.57) BS01 BCL ? GO:0015979 ... P0C0Y9 N/A
    860012 8vtn:M (3.57) BS02 BCL ? GO:0015979 ... P0C0Y9 N/A
    860013 8vtn:M (3.57) BS03 FE ? GO:0015979 ... P0C0Y9 N/A
    860014 8vtn:M (3.57) BS04 BPH ? GO:0015979 ... P0C0Y9 N/A
    860015 8vtn:M (3.57) BS05 SPO ? GO:0015979 ... P0C0Y9 N/A
    860016 8vtn:M (3.57) BS06 BPH ? GO:0015979 ... P0C0Y9 N/A
    860017 8vtn:M (3.57) BS07 BCL ? GO:0015979 ... P0C0Y9 N/A
    860018 8vto:L (3.09) BS01 BPH ? GO:0015979 ... P0C0Y8 N/A
    860019 8vto:L (3.09) BS02 BCL ? GO:0015979 ... P0C0Y8 N/A
    860020 8vto:L (3.09) BS03 BPH ? GO:0015979 ... P0C0Y8 N/A
    860021 8vto:L (3.09) BS04 BCL ? GO:0015979 ... P0C0Y8 N/A
    860022 8vto:L (3.09) BS05 FE ? GO:0015979 ... P0C0Y8 N/A
    860023 8vto:L (3.09) BS06 BCL ? GO:0015979 ... P0C0Y8 N/A
    860024 8vto:M (3.09) BS01 BPH ? GO:0015979 ... P0C0Y9 N/A
    860025 8vto:M (3.09) BS02 BCL ? GO:0015979 ... P0C0Y9 N/A
    860026 8vto:M (3.09) BS03 BPH ? GO:0015979 ... P0C0Y9 N/A
    860027 8vto:M (3.09) BS04 BCL ? GO:0015979 ... P0C0Y9 N/A
    860028 8vto:M (3.09) BS05 FE ? GO:0015979 ... P0C0Y9 N/A
    860029 8vto:M (3.09) BS06 SPO ? GO:0015979 ... P0C0Y9 N/A
    860030 8vto:M (3.09) BS07 BCL ? GO:0015979 ... P0C0Y9 N/A
    860031 8vts:B (1.91) BS01 RIO ? N/A Q60954 N/A
    860032 8vts:D (1.91) BS01 RIO ? N/A Q60954 N/A
    860033 8vtt:D (2.45) BS01 RIO ? N/A Q60954 N/A
    860034 8vuw:A (3.19) BS01 PGW ? N/A P0C7B7 36385237
    860035 8vuw:A (3.19) BS02 DHL ? N/A P0C7B7 36385237
    860036 8vuw:B (3.19) BS01 PGW ? N/A P0C7B7 36385237
    860037 8vuw:B (3.19) BS02 DHL ? N/A P0C7B7 36385237
    860038 8vuw:C (3.19) BS01 PGW ? N/A P0C7B7 36385237
    860039 8vuw:C (3.19) BS02 DHL ? N/A P0C7B7 36385237
    860040 8vuw:D (3.19) BS01 PGW ? N/A P0C7B7 36385237
    860041 8vuw:D (3.19) BS02 DHL ? N/A P0C7B7 36385237
    860042 8vuw:E (3.19) BS01 PGW ? N/A P0C7B7 36385237
    860043 8vuw:E (3.19) BS02 DHL ? N/A P0C7B7 36385237
    860044 8vv3:A (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    860045 8vv3:B (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    860046 8vv3:C (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    860047 8vv3:D (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    860048 8vw0:A (1.7) BS01 AMP 6.3.2.9 GO:0005515 ... P14900 N/A
    860049 8vw0:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860050 8vw0:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860051 8vw0:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860052 8vw0:A (1.7) BS05 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860053 8vw1:A (1.7) BS01 ADP 6.3.2.9 GO:0005515 ... P14900 N/A
    860054 8vw1:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860055 8vw1:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860056 8vw1:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860057 8vw2:A (1.95) BS01 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860058 8vw2:A (1.95) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860059 8vw2:A (1.95) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    860060 8vw2:A (1.95) BS04 ATP 6.3.2.9 GO:0005515 ... P14900 N/A
    860061 8vw2:A (1.95) BS05 MG 6.3.2.9 GO:0005515 ... P14900 N/A
    860062 8vxa:A (2.79) BS01 dna ? GO:0004386 ... A0A426EXV0 38464307
    860063 8vxa:A (2.79) BS02 dna ? GO:0004386 ... A0A426EXV0 38464307
    860064 8vxc:A (2.93) BS01 dna ? GO:0004386 ... A0A426EXV0 38464307
    860065 8vxc:A (2.93) BS02 dna ? GO:0004386 ... A0A426EXV0 38464307
    860066 8vxy:B (3.19) BS01 dna ? GO:0004386 ... A0A426EXV0 38464307
    860067 8vxy:B (3.19) BS02 dna ? GO:0004386 ... A0A426EXV0 38464307
    860068 8vxy:B (3.19) BS03 ATP ? GO:0004386 ... A0A426EXV0 38464307
    860069 8vy7:R (2.68) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    860070 8vy7:R (2.68) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    860071 8vy8:A (2.4) BS01 peptide ? GO:0005515 ... P60616 N/A
    860072 8vy8:B (2.4) BS01 peptide ? GO:0005515 ... P60616 N/A
    860073 8vy8:E (2.4) BS01 peptide ? GO:0005515 ... P60616 N/A
    860074 8vy8:E (2.4) BS02 peptide ? GO:0005515 ... P60616 N/A
    860075 8vy8:G (2.4) BS01 peptide ? GO:0005515 ... P60616 N/A
    860076 8vy8:G (2.4) BS02 peptide ? GO:0005515 ... P60616 N/A
    860077 8vy9:R (2.88) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    860078 8vy9:R (2.88) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    860079 8vz4:A (1.25) BS01 NAP 1.5.1.3 N/A P0ABQ4 N/A
    860080 8vz4:B (1.25) BS01 NAP 1.5.1.3 N/A P0ABQ4 N/A
    860081 8vz8:A (3.45) BS01 2LJ ? N/A Q8HWB0 38537698
    860082 8vz9:A (3.4) BS01 2LJ ? N/A Q8HWB0 38537698
    860083 8vzx:C (1.47) BS01 A1AEQ ? GO:0005501 ... P50120 N/A
    860084 8vzx:D (1.47) BS01 A1AEQ ? GO:0005501 ... P50120 N/A
    860085 8vzy:A (1.34) BS01 A1AEQ ? GO:0005501 ... P50120 N/A
    860086 8vzz:A (1.22) BS01 A1AEQ ? GO:0005501 ... P50120 N/A
    860087 8vzz:B (1.22) BS01 A1AEQ ? GO:0005501 ... P50120 N/A
    860088 8w00:A (1.23) BS01 A1AEQ ? GO:0005501 ... P50120 N/A
    860089 8w00:B (1.23) BS01 A1AEQ ? GO:0005501 ... P50120 N/A
    860090 8w02:B (1.499) BS01 A1AEQ ? GO:0005501 ... P50120 N/A
    860091 8w09:A (3.2) BS01 dna ? N/A Q9YUI7 38582148
    860092 8w09:A (3.2) BS02 dna ? N/A Q9YUI7 38582148
    860093 8w09:A (3.2) BS03 dna ? N/A Q9YUI7 38582148
    860094 8w09:A (3.2) BS04 dna ? N/A Q9YUI7 38582148
    860095 8w09:A (3.2) BS05 MG ? N/A Q9YUI7 38582148
    860096 8w09:A (3.2) BS06 MG ? N/A Q9YUI7 38582148
    860097 8w09:A (3.2) BS07 ZN ? N/A Q9YUI7 38582148
    860098 8w09:A (3.2) BS08 DLU ? N/A Q9YUI7 38582148
    860099 8w09:D (3.2) BS01 dna ? N/A Q9YUI7 38582148
    860100 8w09:D (3.2) BS02 dna ? N/A Q9YUI7 38582148
    860101 8w09:I (3.2) BS01 dna ? N/A Q9YUI7 38582148
    860102 8w09:I (3.2) BS02 dna ? N/A Q9YUI7 38582148
    860103 8w09:I (3.2) BS03 dna ? N/A Q9YUI7 38582148
    860104 8w09:I (3.2) BS04 dna ? N/A Q9YUI7 38582148
    860105 8w09:I (3.2) BS05 MG ? N/A Q9YUI7 38582148
    860106 8w09:I (3.2) BS06 MG ? N/A Q9YUI7 38582148
    860107 8w09:I (3.2) BS07 ZN ? N/A Q9YUI7 38582148
    860108 8w09:I (3.2) BS08 DLU ? N/A Q9YUI7 38582148
    860109 8w09:M (3.2) BS01 dna ? N/A Q9YUI7 38582148
    860110 8w09:M (3.2) BS02 dna ? N/A Q9YUI7 38582148
    860111 8w0b:A (2.3) BS01 YHK 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860112 8w0b:B (2.3) BS01 YHK 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860113 8w0b:C (2.3) BS01 YHK 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860114 8w0c:A (2.35) BS01 YHF 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860115 8w0c:B (2.35) BS01 YHF 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860116 8w0c:C (2.35) BS01 YHF 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860117 8w0d:A (2.7) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860118 8w0d:B (2.7) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860119 8w0d:C (2.7) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860120 8w0h:A (2.95) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860121 8w0h:B (2.95) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860122 8w0h:C (2.95) BS01 YHQ 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860123 8w0j:A (2.85) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860124 8w0j:B (2.85) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860125 8w0j:C (2.85) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860126 8w0l:A (2.75) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860127 8w0l:A (2.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860128 8w0l:B (2.75) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860129 8w0l:C (2.75) BS01 YHT 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860130 8w0l:C (2.75) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860131 8w0m:A (3.1) BS01 7RM 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860132 8w0m:B (3.1) BS01 7RM 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860133 8w0m:C (3.1) BS01 7RM 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    860134 8w1o:K (2.8) BS01 rna 2.7.7.48 N/A W0G557 38614100
    860135 8w1o:K (2.8) BS02 rna 2.7.7.48 N/A W0G557 38614100
    860136 8w21:A (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    860137 8w21:B (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    860138 8w21:C (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    860139 8w21:E (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    860140 8w21:G (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    860141 8w21:H (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    860142 8w2l:A (2.45) BS01 CLR 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860143 8w2l:A (2.45) BS02 M05 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860144 8w2l:A (2.45) BS03 DU0 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860145 8w2l:B (2.45) BS01 DU0 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860146 8w2l:B (2.45) BS02 CLR 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860147 8w2l:B (2.45) BS03 M05 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860148 8w2l:C (2.45) BS01 CLR 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860149 8w2l:C (2.45) BS02 DU0 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860150 8w2l:C (2.45) BS03 CLR 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860151 8w2l:C (2.45) BS04 M05 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860152 8w2l:D (2.45) BS01 CLR 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860153 8w2l:D (2.45) BS02 DU0 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860154 8w2l:D (2.45) BS03 CLR 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860155 8w2l:D (2.45) BS04 M05 2.7.11.1 N/A P42212
    Q923J1    		 38615321
    860156 8w2r:A (3.23) BS01 dna ? N/A F2WR39 38582148
    860157 8w2r:A (3.23) BS02 dna ? N/A F2WR39 38582148
    860158 8w2r:A (3.23) BS03 dna ? N/A F2WR39 38582148
    860159 8w2r:A (3.23) BS04 dna ? N/A F2WR39 38582148
    860160 8w2r:A (3.23) BS05 MG ? N/A F2WR39 38582148
    860161 8w2r:A (3.23) BS06 MG ? N/A F2WR39 38582148
    860162 8w2r:A (3.23) BS07 ZN ? N/A F2WR39 38582148
    860163 8w2r:A (3.23) BS08 DLU ? N/A F2WR39 38582148
    860164 8w2r:C (3.23) BS01 dna ? N/A F2WR39 38582148
    860165 8w2r:D (3.23) BS01 dna ? N/A F2WR39 38582148
    860166 8w2r:D (3.23) BS02 dna ? N/A F2WR39 38582148
    860167 8w2r:I (3.23) BS01 dna ? N/A F2WR39 38582148
    860168 8w2r:I (3.23) BS02 dna ? N/A F2WR39 38582148
    860169 8w2r:I (3.23) BS03 dna ? N/A F2WR39 38582148
    860170 8w2r:I (3.23) BS04 dna ? N/A F2WR39 38582148
    860171 8w2r:I (3.23) BS05 MG ? N/A F2WR39 38582148
    860172 8w2r:I (3.23) BS06 MG ? N/A F2WR39 38582148
    860173 8w2r:I (3.23) BS07 ZN ? N/A F2WR39 38582148
    860174 8w2r:I (3.23) BS08 DLU ? N/A F2WR39 38582148
    860175 8w2r:L (3.23) BS01 dna ? N/A F2WR39 38582148
    860176 8w2r:M (3.23) BS01 dna ? N/A F2WR39 38582148
    860177 8w2r:M (3.23) BS02 dna ? N/A F2WR39 38582148
    860178 8w34:A (2.83) BS01 dna ? N/A F2WR39 38582148
    860179 8w34:A (2.83) BS02 dna ? N/A F2WR39 38582148
    860180 8w34:A (2.83) BS03 dna ? N/A F2WR39 38582148
    860181 8w34:A (2.83) BS04 ZN ? N/A F2WR39 38582148
    860182 8w34:A (2.83) BS05 DLU ? N/A F2WR39 38582148
    860183 8w34:A (2.83) BS06 MG ? N/A F2WR39 38582148
    860184 8w34:A (2.83) BS07 MG ? N/A F2WR39 38582148
    860185 8w34:C (2.83) BS01 dna ? N/A F2WR39 38582148
    860186 8w34:D (2.83) BS01 dna ? N/A F2WR39 38582148
    860187 8w34:D (2.83) BS02 dna ? N/A F2WR39 38582148
    860188 8w34:I (2.83) BS01 dna ? N/A F2WR39 38582148
    860189 8w34:I (2.83) BS02 dna ? N/A F2WR39 38582148
    860190 8w34:I (2.83) BS03 dna ? N/A F2WR39 38582148
    860191 8w34:I (2.83) BS04 ZN ? N/A F2WR39 38582148
    860192 8w34:I (2.83) BS05 DLU ? N/A F2WR39 38582148
    860193 8w34:I (2.83) BS06 MG ? N/A F2WR39 38582148
    860194 8w34:I (2.83) BS07 MG ? N/A F2WR39 38582148
    860195 8w34:L (2.83) BS01 dna ? N/A F2WR39 38582148
    860196 8w34:M (2.83) BS01 dna ? N/A F2WR39 38582148
    860197 8w34:M (2.83) BS02 dna ? N/A F2WR39 38582148
    860198 8w3a:A (1.8) BS01 HEM ? GO:0046872 ... A9DF82 N/A
    860199 8w3a:A (1.8) BS02 A1ADT ? GO:0046872 ... A9DF82 N/A
    860200 8w3a:B (1.8) BS01 A1ADT ? GO:0046872 ... A9DF82 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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