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BioLiP
Download all results in tab-seperated text for 864790 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    862001 8whx:6 (2.8) BS01 rna ? GO:0005737 ... A0QS39 38245551
    862002 8whx:7 (2.8) BS01 rna ? GO:0005840 ... A0R7K0 38245551
    862003 8whx:8 (2.8) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    862004 8whx:E (2.8) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    862005 8whx:F (2.8) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    862006 8whx:G (2.8) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    862007 8whx:H (2.8) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    862008 8whx:H (2.8) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    862009 8whx:I (2.8) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    862010 8whx:J (2.8) BS01 rna ? GO:0005840 ... A0R7F6 38245551
    862011 8whx:M (2.8) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    862012 8whx:N (2.8) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    862013 8whx:N (2.8) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    862014 8whx:O (2.8) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    862015 8whx:Q (2.8) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    862016 8whx:R (2.8) BS01 rna ? GO:0005737 ... A0QSG5 38245551
    862017 8whx:R (2.8) BS02 rna ? GO:0005737 ... A0QSG5 38245551
    862018 8whx:S (2.8) BS01 rna ? GO:0003735 ... A0QV42 38245551
    862019 8whx:S (2.8) BS02 rna ? GO:0003735 ... A0QV42 38245551
    862020 8whx:T (2.8) BS01 rna ? GO:0003735 ... A0QYU6 38245551
    862021 8whx:U (2.8) BS01 rna ? GO:0003735 ... A0R151 38245551
    862022 8whx:V (2.8) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    862023 8whx:W (2.8) BS01 rna ? GO:0003735 ... A0QSD3 38245551
    862024 8whx:X (2.8) BS01 rna ? GO:0005840 ... A0QSG0 38245551
    862025 8whx:Z (2.8) BS01 rna ? GO:0003735 ... A0R150 38245551
    862026 8whx:c (2.8) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    862027 8whx:d (2.8) BS01 rna ? GO:0003729 ... A0QSD7 38245551
    862028 8whx:e (2.8) BS01 rna ? GO:0003735 ... A0QSL7 38245551
    862029 8whx:f (2.8) BS01 rna ? GO:0005737 ... A0QSG6 38245551
    862030 8whx:g (2.8) BS01 rna ? GO:0003735 ... A0A8B4QKV6 38245551
    862031 8whx:g (2.8) BS02 rna ? GO:0003735 ... A0A8B4QKV6 38245551
    862032 8whx:h (2.8) BS01 rna ? GO:0000028 ... A0QS97 38245551
    862033 8whx:i (2.8) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    862034 8whx:j (2.8) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    862035 8whx:k (2.8) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    862036 8whx:l (2.8) BS01 rna ? GO:0005840 ... A0QSL6 38245551
    862037 8whx:m (2.8) BS01 rna ? GO:0000049 ... A0QS96 38245551
    862038 8whx:n (2.8) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    862039 8whx:o (2.8) BS01 rna ? GO:0003735 ... A0R550 38245551
    862040 8whx:p (2.8) BS01 rna ? GO:0005737 ... A0QVQ3 38245551
    862041 8whx:p (2.8) BS02 rna ? GO:0005737 ... A0QVQ3 38245551
    862042 8whx:q (2.8) BS01 rna ? GO:0003735 ... A0QV37 38245551
    862043 8whx:r (2.8) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    862044 8whx:s (2.8) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    862045 8whx:t (2.8) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    862046 8whx:u (2.8) BS01 rna ? GO:0005829 ... A0R102 38245551
    862047 8whx:v (2.8) BS01 rna ? N/A A0QR10 38245551
    862048 8whx:w (2.8) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    862049 8why:1 (2.7) BS01 rna ? GO:0005840 ... A0QV03 38245551
    862050 8why:2 (2.7) BS01 rna ? GO:0005840 ... A0QSD9 38245551
    862051 8why:3 (2.7) BS01 rna ? GO:0005840 ... A0QSG7 38245551
    862052 8why:3 (2.7) BS02 rna ? GO:0005840 ... A0QSG7 38245551
    862053 8why:4 (2.7) BS01 rna ? GO:0005840 ... A0R215 38245551
    862054 8why:5 (2.7) BS01 rna ? GO:0005840 ... A0R3I9 38245551
    862055 8why:6 (2.7) BS01 rna ? GO:0005737 ... A0QS39 38245551
    862056 8why:7 (2.7) BS01 rna ? GO:0005840 ... A0R7K0 38245551
    862057 8why:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    862058 8why:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    862059 8why:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    862060 8why:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    862061 8why:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    862062 8why:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    862063 8why:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    862064 8why:J (2.7) BS01 rna ? GO:0005840 ... A0R7F6 38245551
    862065 8why:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    862066 8why:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    862067 8why:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    862068 8why:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    862069 8why:R (2.7) BS01 rna ? GO:0005737 ... A0QSG5 38245551
    862070 8why:R (2.7) BS02 rna ? GO:0005737 ... A0QSG5 38245551
    862071 8why:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    862072 8why:T (2.7) BS01 rna ? GO:0003735 ... A0QYU6 38245551
    862073 8why:U (2.7) BS01 rna ? GO:0003735 ... A0R151 38245551
    862074 8why:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    862075 8why:W (2.7) BS01 rna ? GO:0003735 ... A0QSD3 38245551
    862076 8why:X (2.7) BS01 rna ? GO:0005840 ... A0QSG0 38245551
    862077 8why:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    862078 8why:Z (2.7) BS02 rna ? GO:0003735 ... A0R150 38245551
    862079 8wi7:1 (3.5) BS01 rna ? GO:0005840 ... A0QV03 38245551
    862080 8wi7:2 (3.5) BS01 rna ? GO:0005840 ... A0QSD9 38245551
    862081 8wi7:3 (3.5) BS01 rna ? GO:0005840 ... A0QSG7 38245551
    862082 8wi7:3 (3.5) BS02 rna ? GO:0005840 ... A0QSG7 38245551
    862083 8wi7:4 (3.5) BS01 rna ? GO:0005840 ... A0R215 38245551
    862084 8wi7:5 (3.5) BS01 rna ? GO:0005840 ... A0R3I9 38245551
    862085 8wi7:6 (3.5) BS01 rna ? GO:0005737 ... A0QS39 38245551
    862086 8wi7:7 (3.5) BS01 rna ? GO:0005840 ... A0R7K0 38245551
    862087 8wi7:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    862088 8wi7:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    862089 8wi7:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    862090 8wi7:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    862091 8wi7:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    862092 8wi7:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    862093 8wi7:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    862094 8wi7:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    862095 8wi7:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    862096 8wi7:N (3.5) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    862097 8wi7:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    862098 8wi7:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    862099 8wi7:R (3.5) BS01 rna ? GO:0005737 ... A0QSG5 38245551
    862100 8wi7:R (3.5) BS02 rna ? GO:0005737 ... A0QSG5 38245551
    862101 8wi7:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    862102 8wi7:S (3.5) BS02 rna ? GO:0003735 ... A0QV42 38245551
    862103 8wi7:T (3.5) BS01 rna ? GO:0003735 ... A0QYU6 38245551
    862104 8wi7:U (3.5) BS01 rna ? GO:0003735 ... A0R151 38245551
    862105 8wi7:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    862106 8wi7:W (3.5) BS01 rna ? GO:0003735 ... A0QSD3 38245551
    862107 8wi7:X (3.5) BS01 rna ? GO:0005840 ... A0QSG0 38245551
    862108 8wi7:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    862109 8wi7:c (3.5) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    862110 8wi7:d (3.5) BS01 rna ? GO:0003729 ... A0QSD7 38245551
    862111 8wi7:e (3.5) BS01 rna ? GO:0003735 ... A0QSL7 38245551
    862112 8wi7:f (3.5) BS01 rna ? GO:0005737 ... A0QSG6 38245551
    862113 8wi7:g (3.5) BS01 rna ? GO:0003735 ... A0A8B4QKV6 38245551
    862114 8wi7:g (3.5) BS02 rna ? GO:0003735 ... A0A8B4QKV6 38245551
    862115 8wi7:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    862116 8wi7:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    862117 8wi7:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    862118 8wi7:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    862119 8wi7:l (3.5) BS01 rna ? GO:0005840 ... A0QSL6 38245551
    862120 8wi7:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    862121 8wi7:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    862122 8wi7:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    862123 8wi7:p (3.5) BS01 rna ? GO:0005737 ... A0QVQ3 38245551
    862124 8wi7:p (3.5) BS02 rna ? GO:0005737 ... A0QVQ3 38245551
    862125 8wi7:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    862126 8wi7:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    862127 8wi7:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    862128 8wi7:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    862129 8wi7:u (3.5) BS01 rna ? GO:0005829 ... A0R102 38245551
    862130 8wi7:v (3.5) BS01 rna ? N/A A0QR10 38245551
    862131 8wi7:v (3.5) BS02 rna ? N/A A0QR10 38245551
    862132 8wi7:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    862133 8wi8:1 (2.7) BS01 rna ? GO:0005840 ... A0QV03 38245551
    862134 8wi8:2 (2.7) BS01 rna ? GO:0005840 ... A0QSD9 38245551
    862135 8wi8:3 (2.7) BS01 rna ? GO:0005840 ... A0QSG7 38245551
    862136 8wi8:3 (2.7) BS02 rna ? GO:0005840 ... A0QSG7 38245551
    862137 8wi8:5 (2.7) BS01 rna ? GO:0005840 ... A0R3I9 38245551
    862138 8wi8:6 (2.7) BS01 rna ? GO:0005737 ... A0QS39 38245551
    862139 8wi8:7 (2.7) BS01 rna ? GO:0005840 ... A0R7K0 38245551
    862140 8wi8:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    862141 8wi8:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    862142 8wi8:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    862143 8wi8:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    862144 8wi8:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    862145 8wi8:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    862146 8wi8:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    862147 8wi8:J (2.7) BS01 rna ? GO:0005840 ... A0R7F6 38245551
    862148 8wi8:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    862149 8wi8:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    862150 8wi8:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    862151 8wi8:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    862152 8wi8:R (2.7) BS01 rna ? GO:0005737 ... A0QSG5 38245551
    862153 8wi8:R (2.7) BS02 rna ? GO:0005737 ... A0QSG5 38245551
    862154 8wi8:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    862155 8wi8:T (2.7) BS01 rna ? GO:0003735 ... A0QYU6 38245551
    862156 8wi8:U (2.7) BS01 rna ? GO:0003735 ... A0R151 38245551
    862157 8wi8:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    862158 8wi8:W (2.7) BS01 rna ? GO:0003735 ... A0QSD3 38245551
    862159 8wi8:X (2.7) BS01 rna ? GO:0005840 ... A0QSG0 38245551
    862160 8wi8:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    862161 8wi9:c (3.5) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    862162 8wi9:d (3.5) BS01 rna ? GO:0003729 ... A0QSD7 38245551
    862163 8wi9:e (3.5) BS01 rna ? GO:0003735 ... A0QSL7 38245551
    862164 8wi9:f (3.5) BS01 rna ? GO:0005737 ... A0QSG6 38245551
    862165 8wi9:g (3.5) BS01 rna ? GO:0003735 ... A0A8B4QKV6 38245551
    862166 8wi9:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    862167 8wi9:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    862168 8wi9:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    862169 8wi9:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    862170 8wi9:l (3.5) BS01 rna ? GO:0005840 ... A0QSL6 38245551
    862171 8wi9:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    862172 8wi9:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    862173 8wi9:o (3.5) BS01 rna ? GO:0003735 ... A0QSG2 38245551
    862174 8wi9:p (3.5) BS01 rna ? GO:0005737 ... A0QVQ3 38245551
    862175 8wi9:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    862176 8wi9:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    862177 8wi9:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    862178 8wi9:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    862179 8wi9:t (3.5) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    862180 8wi9:u (3.5) BS01 rna ? GO:0005829 ... A0R102 38245551
    862181 8wi9:v (3.5) BS01 rna ? N/A A0QR10 38245551
    862182 8wi9:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    862183 8wib:1 (3.5) BS01 rna ? GO:0005840 ... A0QV03 38245551
    862184 8wib:2 (3.5) BS01 rna ? GO:0005840 ... A0QSD9 38245551
    862185 8wib:3 (3.5) BS01 rna ? GO:0005840 ... A0QSG7 38245551
    862186 8wib:4 (3.5) BS01 rna ? GO:0005840 ... A0R215 38245551
    862187 8wib:5 (3.5) BS01 rna ? GO:0005840 ... A0R3I9 38245551
    862188 8wib:6 (3.5) BS01 rna ? GO:0005737 ... A0QS39 38245551
    862189 8wib:7 (3.5) BS01 rna ? GO:0005840 ... A0R7K0 38245551
    862190 8wib:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    862191 8wib:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    862192 8wib:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    862193 8wib:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    862194 8wib:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    862195 8wib:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    862196 8wib:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    862197 8wib:J (3.5) BS01 rna ? GO:0005840 ... A0R7F6 38245551
    862198 8wib:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    862199 8wib:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    862200 8wib:N (3.5) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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