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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 864790 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    861201 8waz:o (2.76) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861202 8waz:o (2.76) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861203 8waz:o (2.76) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861204 8waz:p (2.76) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    861205 8waz:p (2.76) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    861206 8waz:p (2.76) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    861207 8waz:p (2.76) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    861208 8waz:q (2.76) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    861209 8waz:s (2.76) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    861210 8waz:w (2.76) BS01 ZN ? GO:0000428 ... P60899 38127763
    861211 8waz:w (2.76) BS02 ZN ? GO:0000428 ... P60899 38127763
    861212 8waz:x (2.76) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    861213 8waz:z (2.76) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    861214 8wb0:o (2.94) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861215 8wb0:o (2.94) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861216 8wb0:o (2.94) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861217 8wb0:o (2.94) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861218 8wb0:o (2.94) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861219 8wb0:o (2.94) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861220 8wb0:o (2.94) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861221 8wb0:o (2.94) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    861222 8wb0:p (2.94) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    861223 8wb0:p (2.94) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    861224 8wb0:p (2.94) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    861225 8wb0:p (2.94) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    861226 8wb0:q (2.94) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    861227 8wb0:s (2.94) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    861228 8wb0:w (2.94) BS01 ZN ? GO:0000428 ... P60899 38127763
    861229 8wb0:w (2.94) BS02 ZN ? GO:0000428 ... P60899 38127763
    861230 8wb0:x (2.94) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    861231 8wb0:z (2.94) BS01 ZN ? GO:0001054 ... A0A8D0JYF1 38127763
    861232 8wb2:A (1.9) BS01 HEM ? GO:0000325 ... Q9FGT8 38103756
    861233 8wba:A (3.1) BS01 Y01 ? GO:0005524 ... Q84TH5 38050355
    861234 8wba:A (3.1) BS02 Y01 ? GO:0005524 ... Q84TH5 38050355
    861235 8wba:B (3.1) BS01 Y01 ? GO:0005524 ... Q84TH5 38050355
    861236 8wba:B (3.1) BS02 Y01 ? GO:0005524 ... Q84TH5 38050355
    861237 8wbq:A (2.2) BS01 TLA ? GO:0016787 ... Q1KLR5 38199576
    861238 8wbq:B (2.2) BS01 TLA ? GO:0016787 ... Q1KLR5 38199576
    861239 8wbt:A (2.05) BS01 TLA 3.8.1.2 GO:0003824 ... W8PFD2 38199576
    861240 8wbt:B (2.05) BS01 TLA 3.8.1.2 GO:0003824 ... W8PFD2 38199576
    861241 8wbt:C (2.05) BS01 TLA 3.8.1.2 GO:0003824 ... W8PFD2 38199576
    861242 8wbt:D (2.05) BS01 TLA 3.8.1.2 GO:0003824 ... W8PFD2 38199576
    861243 8wbu:A (1.7) BS01 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    861244 8wbu:A (1.7) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    861245 8wbv:A (1.95) BS01 DNO 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    861246 8wbv:A (1.95) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    861247 8wbx:B (3.23) BS01 A8S ? GO:0005524 ... Q84TH5 38050355
    861248 8wc3:R (3.0) BS01 UJL ? GO:0001594 ... Q923Y8 37963465
    861249 8wc4:R (3.1) BS01 VMT ? GO:0001594 ... Q923Y8 37963465
    861250 8wc6:R (3.2) BS01 PEA ? GO:0001594 ... Q923Y8 37963465
    861251 8wc7:R (3.1) BS01 VMK ? GO:0001594 ... Q923Y8 37963465
    861252 8wc8:R (2.9) BS01 VMT ? GO:0001594 ... Q96RJ0 37963465
    861253 8wc9:R (3.2) BS01 VMT ? GO:0001594 ... Q923Y8 37963465
    861254 8wca:R (3.48) BS01 PEA ? GO:0001594 ... Q96RJ0 37963465
    861255 8wcn:A (3.2) BS01 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    861256 8wcn:A (3.2) BS02 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    861257 8wcn:A (3.2) BS03 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    861258 8wcn:B (3.2) BS01 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    861259 8wcn:B (3.2) BS02 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    861260 8wcn:B (3.2) BS03 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    861261 8wcn:B (3.2) BS04 G2P 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    861262 8wcn:B (3.2) BS05 MG 2.7.7.65 GO:0005886 ... A0A072ZHL9 38424057
    861263 8wd2:A (1.85) BS01 ZN ? GO:0000976 ... P04637 N/A
    861264 8wd2:B (1.85) BS01 ZN ? GO:0000976 ... P04637 N/A
    861265 8wd3:A (3.3) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    861266 8wd3:B (3.3) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 N/A
    861267 8wd4:A (2.55) BS01 W7W 2.7.10.1 GO:0004672 ... P00533 38065292
    861268 8wd8:A (2.9) BS01 dna ? N/A A0A0Q2M2Z1 38295801
    861269 8wd8:A (2.9) BS02 dna ? N/A A0A0Q2M2Z1 38295801
    861270 8wd8:A (2.9) BS03 ZN ? N/A A0A0Q2M2Z1 38295801
    861271 8wd8:A (2.9) BS04 MG ? N/A A0A0Q2M2Z1 38295801
    861272 8wd8:A (2.9) BS05 MG ? N/A A0A0Q2M2Z1 38295801
    861273 8wd8:A (2.9) BS06 MG ? N/A A0A0Q2M2Z1 38295801
    861274 8wd8:B (2.9) BS01 dna ? N/A A0A0Q2M2Z1 38295801
    861275 8wd8:B (2.9) BS02 dna ? N/A A0A0Q2M2Z1 38295801
    861276 8wd8:B (2.9) BS03 ZN ? N/A A0A0Q2M2Z1 38295801
    861277 8wd8:B (2.9) BS04 MG ? N/A A0A0Q2M2Z1 38295801
    861278 8wd8:B (2.9) BS05 MG ? N/A A0A0Q2M2Z1 38295801
    861279 8wd8:B (2.9) BS06 MG ? N/A A0A0Q2M2Z1 38295801
    861280 8wdg:A (0.99) BS01 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    861281 8wdg:A (0.99) BS02 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    861282 8wdg:A (0.99) BS03 XYL 5.3.1.5 GO:0000287 ... P24300 37793321
    861283 8wdg:A (0.99) BS04 MG 5.3.1.5 GO:0000287 ... P24300 37793321
    861284 8wdh:A (1.7) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    861285 8wdh:A (1.7) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    861286 8wdt:A (3.34) BS01 WCH ? GO:0001609 ... P29274 38171234
    861287 8wdu:0 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861288 8wdu:0 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861289 8wdu:0 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861290 8wdu:1 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861291 8wdu:1 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861292 8wdu:1 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861293 8wdu:1 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861294 8wdu:2 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861295 8wdu:2 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861296 8wdu:2 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861297 8wdu:3 (2.24) BS01 Z41 ? GO:0005886 ... D3RP67 N/A
    861298 8wdu:3 (2.24) BS02 CRT ? GO:0005886 ... D3RP67 N/A
    861299 8wdu:3 (2.24) BS03 BCL ? GO:0005886 ... D3RP67 N/A
    861300 8wdu:3 (2.24) BS04 BCL ? GO:0005886 ... D3RP67 N/A
    861301 8wdu:3 (2.24) BS05 CRT ? GO:0005886 ... D3RP67 N/A
    861302 8wdu:3 (2.24) BS06 BCL ? GO:0005886 ... D3RP67 N/A
    861303 8wdu:3 (2.24) BS07 CRT ? GO:0005886 ... D3RP67 N/A
    861304 8wdu:4 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861305 8wdu:4 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861306 8wdu:4 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861307 8wdu:5 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861308 8wdu:5 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861309 8wdu:5 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861310 8wdu:5 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861311 8wdu:5 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861312 8wdu:6 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861313 8wdu:6 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861314 8wdu:6 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861315 8wdu:7 (2.24) BS01 UQ8 ? GO:0005886 ... D3RP69 N/A
    861316 8wdu:7 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 N/A
    861317 8wdu:7 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861318 8wdu:7 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 N/A
    861319 8wdu:7 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861320 8wdu:7 (2.24) BS06 BCL ? GO:0005886 ... D3RP69 N/A
    861321 8wdu:7 (2.24) BS07 CRT ? GO:0005886 ... D3RP69 N/A
    861322 8wdu:8 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861323 8wdu:8 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861324 8wdu:8 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861325 8wdu:9 (2.24) BS01 UQ8 ? GO:0005886 ... D3RP69 N/A
    861326 8wdu:9 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 N/A
    861327 8wdu:9 (2.24) BS03 CRT ? GO:0005886 ... D3RP69 N/A
    861328 8wdu:9 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 N/A
    861329 8wdu:9 (2.24) BS05 BCL ? GO:0005886 ... D3RP69 N/A
    861330 8wdu:A (2.24) BS01 BCL ? GO:0005886 ... D3RP69 N/A
    861331 8wdu:A (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861332 8wdu:A (2.24) BS03 CRT ? GO:0005886 ... D3RP69 N/A
    861333 8wdu:A (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861334 8wdu:A (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861335 8wdu:B (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861336 8wdu:B (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861337 8wdu:B (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861338 8wdu:C (2.24) BS01 HEM ? N/A O82947 N/A
    861339 8wdu:C (2.24) BS02 HEM ? N/A O82947 N/A
    861340 8wdu:C (2.24) BS03 HEM ? N/A O82947 N/A
    861341 8wdu:C (2.24) BS04 HEM ? N/A O82947 N/A
    861342 8wdu:C (2.24) BS05 MG ? N/A O82947 N/A
    861343 8wdu:C (2.24) BS06 Z41 ? N/A O82947 N/A
    861344 8wdu:D (2.24) BS01 CRT ? GO:0005886 ... D3RP74 N/A
    861345 8wdu:D (2.24) BS02 BCL ? GO:0005886 ... D3RP74 N/A
    861346 8wdu:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 N/A
    861347 8wdu:D (2.24) BS04 BCL ? GO:0005886 ... D3RP74 N/A
    861348 8wdu:D (2.24) BS05 CRT ? GO:0005886 ... D3RP74 N/A
    861349 8wdu:D (2.24) BS06 CRT ? GO:0005886 ... D3RP74 N/A
    861350 8wdu:E (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861351 8wdu:E (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861352 8wdu:E (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861353 8wdu:F (2.24) BS01 CRT ? GO:0005886 ... D3RP74 N/A
    861354 8wdu:F (2.24) BS02 BCL ? GO:0005886 ... D3RP74 N/A
    861355 8wdu:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 N/A
    861356 8wdu:F (2.24) BS04 BCL ? GO:0005886 ... D3RP74 N/A
    861357 8wdu:F (2.24) BS05 CRT ? GO:0005886 ... D3RP74 N/A
    861358 8wdu:F (2.24) BS06 BCL ? GO:0005886 ... D3RP74 N/A
    861359 8wdu:F (2.24) BS07 CRT ? GO:0005886 ... D3RP74 N/A
    861360 8wdu:G (2.24) BS01 BCL ? GO:0005886 ... D3RP68 N/A
    861361 8wdu:G (2.24) BS02 BCL ? GO:0005886 ... D3RP68 N/A
    861362 8wdu:G (2.24) BS03 CRT ? GO:0005886 ... D3RP68 N/A
    861363 8wdu:I (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861364 8wdu:I (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861365 8wdu:I (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861366 8wdu:I (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861367 8wdu:I (2.24) BS05 CRT ? GO:0005886 ... D3RP69 N/A
    861368 8wdu:J (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861369 8wdu:J (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861370 8wdu:J (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861371 8wdu:K (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861372 8wdu:K (2.24) BS02 BCL ? GO:0005886 ... D3RP69 N/A
    861373 8wdu:K (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861374 8wdu:K (2.24) BS04 CRT ? GO:0005886 ... D3RP69 N/A
    861375 8wdu:L (2.24) BS01 BCL ? GO:0015979 ... P51762 N/A
    861376 8wdu:L (2.24) BS02 BPH ? GO:0015979 ... P51762 N/A
    861377 8wdu:L (2.24) BS03 UQ8 ? GO:0015979 ... P51762 N/A
    861378 8wdu:L (2.24) BS04 UQ8 ? GO:0015979 ... P51762 N/A
    861379 8wdu:L (2.24) BS05 BCL ? GO:0015979 ... P51762 N/A
    861380 8wdu:L (2.24) BS06 UQ8 ? GO:0015979 ... P51762 N/A
    861381 8wdu:L (2.24) BS07 FE ? GO:0015979 ... P51762 N/A
    861382 8wdu:L (2.24) BS08 BCL ? GO:0015979 ... P51762 N/A
    861383 8wdu:L (2.24) BS09 BPH ? GO:0015979 ... P51762 N/A
    861384 8wdu:L (2.24) BS10 MQ8 ? GO:0015979 ... P51762 N/A
    861385 8wdu:M (2.24) BS01 BPH ? GO:0015979 ... P51763 N/A
    861386 8wdu:M (2.24) BS02 BCL ? GO:0015979 ... P51763 N/A
    861387 8wdu:M (2.24) BS03 UQ8 ? GO:0015979 ... P51763 N/A
    861388 8wdu:M (2.24) BS04 FE ? GO:0015979 ... P51763 N/A
    861389 8wdu:M (2.24) BS05 BCL ? GO:0015979 ... P51763 N/A
    861390 8wdu:M (2.24) BS06 BCL ? GO:0015979 ... P51763 N/A
    861391 8wdu:M (2.24) BS07 BPH ? GO:0015979 ... P51763 N/A
    861392 8wdu:M (2.24) BS08 MQ8 ? GO:0015979 ... P51763 N/A
    861393 8wdu:M (2.24) BS09 CRT ? GO:0015979 ... P51763 N/A
    861394 8wdu:N (2.24) BS01 BCL ? GO:0005886 ... D3RP75 N/A
    861395 8wdu:N (2.24) BS02 BCL ? GO:0005886 ... D3RP75 N/A
    861396 8wdu:N (2.24) BS03 CRT ? GO:0005886 ... D3RP75 N/A
    861397 8wdu:O (2.24) BS01 CRT ? GO:0005886 ... D3RP69 N/A
    861398 8wdu:O (2.24) BS02 CRT ? GO:0005886 ... D3RP69 N/A
    861399 8wdu:O (2.24) BS03 BCL ? GO:0005886 ... D3RP69 N/A
    861400 8wdu:O (2.24) BS04 BCL ? GO:0005886 ... D3RP69 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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