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BioLiP
Download all results in tab-seperated text for 861841 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    861801 9jdw:A (2.5) BS01 ABA 2.1.4.1 GO:0005515 ... P50440 9915841
    861802 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    861803 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    861804 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    861805 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    861806 9lpr:A (2.2) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1931963
    861807 9lyz:A (2.5) BS01 AMU 3.2.1.17 GO:0003796 ... P00698 514367
    861808 9mht:A (2.39) BS01 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    861809 9mht:A (2.39) BS02 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    861810 9mht:A (2.39) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9783745
    861811 9nse:A (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    861812 9nse:A (2.24) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    861813 9nse:A (2.24) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    861814 9nse:A (2.24) BS04 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    861815 9nse:A (2.24) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    861816 9nse:B (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    861817 9nse:B (2.24) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    861818 9nse:B (2.24) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    861819 9nse:B (2.24) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    861820 9nse:B (2.24) BS05 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    861821 9nse:B (2.24) BS06 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    861822 9pcy:A (-1.00) BS01 CU ? GO:0005507 ... P00287 1920431
    861823 9rsa:B (1.8) BS01 ADU 4.6.1.18 GO:0003676 ... P61823 2340284
    861824 9rub:A (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    861825 9rub:B (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    861826 9rub:B (2.6) BS02 MG 4.1.1.39 GO:0000287 ... P04718 1905726
    861827 9xia:A (1.9) BS01 DFR 5.3.1.5 GO:0000287 ... P24300 2734296
    861828 9xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    861829 9xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    861830 9xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    861831 9xim:A (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    861832 9xim:A (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    861833 9xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    861834 9xim:B (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    861835 9xim:B (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    861836 9xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    861837 9xim:C (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    861838 9xim:C (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    861839 9xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    861840 9xim:D (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    861841 9xim:D (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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