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BioLiP
Download all results in tab-seperated text for 864790 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    860401 8w6x:S (1.04) BS02 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    860402 8w6x:S (1.04) BS03 F3S 1.12.2.1 GO:0009055 ... P21853 37712026
    860403 8w75:A (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860404 8w75:B (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860405 8w75:C (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860406 8w75:D (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860407 8w78:A (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860408 8w78:A (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860409 8w78:B (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860410 8w78:B (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860411 8w78:C (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860412 8w78:C (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860413 8w78:D (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860414 8w78:D (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860415 8w7d:A (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    860416 8w7d:B (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    860417 8w7d:C (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    860418 8w7d:D (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    860419 8w7f:A (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860420 8w7f:B (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860421 8w7f:C (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860422 8w7f:D (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    860423 8w7h:A (1.85) BS01 XUH 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 38141766
    860424 8w7m:2 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    860425 8w7m:2 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 37730685
    860426 8w7m:3 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P24279 37730685
    860427 8w7m:3 (4.12) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    860428 8w7m:3 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    860429 8w7m:4 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P30665 37730685
    860430 8w7m:4 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    860431 8w7m:4 (4.12) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 37730685
    860432 8w7m:5 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    860433 8w7m:5 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29496 37730685
    860434 8w7m:6 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    860435 8w7m:6 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P53091 37730685
    860436 8w7m:7 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P38132 37730685
    860437 8w7m:7 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    860438 8w7m:7 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    860439 8w7m:7 (4.12) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 37730685
    860440 8w87:R (2.8) BS01 B40 ? GO:0001594 ... Q96RJ0 37935377
    860441 8w88:R (2.6) BS01 CLR ? GO:0001594 ... Q96RJ0 37935377
    860442 8w88:R (2.6) BS02 CLR ? GO:0001594 ... Q96RJ0 37935377
    860443 8w88:R (2.6) BS03 UJL ? GO:0001594 ... Q96RJ0 37935377
    860444 8w89:R (3.0) BS01 PEA ? GO:0001594 ... Q96RJ0 37935377
    860445 8w8a:R (2.8) BS01 T5U ? GO:0001594 ... Q96RJ0 37935377
    860446 8w8b:R (3.0) BS01 CLR ? GO:0001662 ... P08908
    P0ABE7    		 37935377
    860447 8w8b:R (3.0) BS02 UJL ? GO:0001662 ... P08908
    P0ABE7    		 37935377
    860448 8w8e:A (3.9) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860449 8w8e:A (3.9) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860450 8w8e:A (3.9) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860451 8w8e:A (3.9) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860452 8w8e:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860453 8w8e:A (3.9) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860454 8w8e:B (3.9) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 N/A
    860455 8w8e:B (3.9) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 N/A
    860456 8w8e:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 N/A
    860457 8w8e:C (3.9) BS01 ZN ? N/A A0A481DF93 N/A
    860458 8w8e:E (3.9) BS01 dna ? GO:0001054 ... A0A4X1VTX4 N/A
    860459 8w8e:I (3.9) BS01 ZN ? GO:0000428 ... P60899 N/A
    860460 8w8e:I (3.9) BS02 ZN ? GO:0000428 ... P60899 N/A
    860461 8w8e:L (3.9) BS01 ZN ? GO:0005634 ... A0A4X1TRS6 N/A
    860462 8w8e:Z (3.9) BS01 dna ? GO:0000122 ... O00267 N/A
    860463 8w8e:a (3.9) BS01 GTP 2.7.7.50
    3.6.1.74    		 GO:0003824 ... O60942 N/A
    860464 8w8f:A (4.0) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860465 8w8f:A (4.0) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860466 8w8f:A (4.0) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860467 8w8f:A (4.0) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860468 8w8f:A (4.0) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860469 8w8f:A (4.0) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 N/A
    860470 8w8f:B (4.0) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 N/A
    860471 8w8f:B (4.0) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 N/A
    860472 8w8f:B (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 N/A
    860473 8w8f:C (4.0) BS01 ZN ? N/A A0A481DF93 N/A
    860474 8w8f:E (4.0) BS01 dna ? GO:0001054 ... A0A4X1VTX4 N/A
    860475 8w8f:I (4.0) BS01 ZN ? GO:0000428 ... P60899 N/A
    860476 8w8f:I (4.0) BS02 ZN ? GO:0000428 ... P60899 N/A
    860477 8w8f:L (4.0) BS01 ZN ? GO:0005634 ... A0A4X1TRS6 N/A
    860478 8w8f:Z (4.0) BS01 dna ? GO:0000122 ... O00267 N/A
    860479 8w8k:A (2.25) BS01 TUH 3.6.4.10 N/A P07900 N/A
    860480 8w8k:B (2.25) BS01 TUH 3.6.4.10 N/A P07900 N/A
    860481 8w9a:A (2.7) BS01 UEX 2.7.11.1
    2.7.1.137
    2.7.1.153    		 N/A P42336 38582077
    860482 8w9b:A (3.0) BS01 UJ3 2.7.11.1
    2.7.1.137
    2.7.1.153    		 N/A P42336 38582077
    860483 8w9m:C (3.1) BS01 ATP ? GO:0005524 ... Q8YZ76 38457518
    860484 8w9m:C (3.1) BS02 MG ? GO:0005524 ... Q8YZ76 38457518
    860485 8w9m:C (3.1) BS03 ATP ? GO:0005524 ... Q8YZ76 38457518
    860486 8w9m:D (3.1) BS01 ATP ? GO:0005524 ... Q8YZ75 38457518
    860487 8w9m:D (3.1) BS02 ATP ? GO:0005524 ... Q8YZ75 38457518
    860488 8w9m:D (3.1) BS03 MG ? GO:0005524 ... Q8YZ75 38457518
    860489 8w9p:R (5.7) BS01 peptide ? N/A B4Y048 38480794
    860490 8w9p:S (5.7) BS01 peptide ? N/A B4Y048 38480794
    860491 8w9p:T (5.7) BS01 peptide ? N/A B4Y048 38480794
    860492 8w9p:U (5.7) BS01 peptide ? N/A B4Y048 38480794
    860493 8w9p:V (5.7) BS01 peptide ? N/A B4Y048 38480794
    860494 8w9p:V (5.7) BS02 peptide ? N/A B4Y048 38480794
    860495 8w9p:W (5.7) BS01 peptide ? N/A B4Y048 38480794
    860496 8w9q:R (5.7) BS01 peptide ? N/A B4Y048 38480794
    860497 8w9q:S (5.7) BS01 peptide ? N/A B4Y048 38480794
    860498 8w9q:S (5.7) BS02 peptide ? N/A B4Y048 38480794
    860499 8w9q:T (5.7) BS01 peptide ? N/A B4Y048 38480794
    860500 8w9w:A (3.74) BS01 UJO 2.7.8.- N/A Q96LT4 38388831
    860501 8w9w:A (3.74) BS02 OPE 2.7.8.- N/A Q96LT4 38388831
    860502 8w9w:B (3.74) BS01 UJO 2.7.8.- N/A Q96LT4 38388831
    860503 8w9w:B (3.74) BS02 OPE 2.7.8.- N/A Q96LT4 38388831
    860504 8w9w:C (3.74) BS01 UJO 2.7.8.- N/A Q96LT4 38388831
    860505 8w9w:C (3.74) BS02 OPE 2.7.8.- N/A Q96LT4 38388831
    860506 8w9w:D (3.74) BS01 UJO 2.7.8.- N/A Q96LT4 38388831
    860507 8w9w:E (3.74) BS01 UJO 2.7.8.- N/A Q96LT4 38388831
    860508 8w9w:F (3.74) BS01 UJO 2.7.8.- N/A Q96LT4 38388831
    860509 8w9w:F (3.74) BS02 OPE 2.7.8.- N/A Q96LT4 38388831
    860510 8w9z:B (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    860511 8w9z:C (3.0) BS01 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    860512 8w9z:G (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    860513 8w9z:L (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    860514 8wa0:B (2.7) BS01 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    860515 8wa0:B (2.7) BS02 rna 2.7.7.6 GO:0000428 ... P06271 38428393
    860516 8wa0:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    860517 8wa0:C (2.7) BS01 dna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    860518 8wa0:C (2.7) BS02 rna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    860519 8wa0:C (2.7) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    860520 8wa0:G (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    860521 8wa0:L (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    860522 8wa1:B (2.8) BS01 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    860523 8wa1:B (2.8) BS02 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    860524 8wa1:B (2.8) BS03 rna 2.7.7.6 GO:0000428 ... P06271 38428393
    860525 8wa1:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    860526 8wa1:C (2.8) BS01 dna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    860527 8wa1:C (2.8) BS02 rna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    860528 8wa1:C (2.8) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    860529 8wa1:G (2.8) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    860530 8wa1:L (2.8) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    860531 8wa1:c (2.8) BS01 dna 2.7.7.6 GO:0000428 ... P38550 38428393
    860532 8wa2:A (3.0) BS01 FUB ? N/A A8J9H7 38552612
    860533 8wa2:A (3.0) BS02 FUB ? N/A A8J9H7 38552612
    860534 8wa2:A (3.0) BS03 FUB ? N/A A8J9H7 38552612
    860535 8wa2:A (3.0) BS04 GZL ? N/A A8J9H7 38552612
    860536 8wa2:A (3.0) BS05 FUB ? N/A A8J9H7 38552612
    860537 8wa2:A (3.0) BS06 FUB ? N/A A8J9H7 38552612
    860538 8wa2:A (3.0) BS07 GZL ? N/A A8J9H7 38552612
    860539 8wa2:A (3.0) BS08 FUB ? N/A A8J9H7 38552612
    860540 8wa2:A (3.0) BS09 FUB ? N/A A8J9H7 38552612
    860541 8wa2:A (3.0) BS10 FUB ? N/A A8J9H7 38552612
    860542 8wa2:A (3.0) BS11 FUB ? N/A A8J9H7 38552612
    860543 8wa2:A (3.0) BS12 FUB ? N/A A8J9H7 38552612
    860544 8wa2:A (3.0) BS13 FUB ? N/A A8J9H7 38552612
    860545 8wa2:A (3.0) BS14 FUB ? N/A A8J9H7 38552612
    860546 8wa2:A (3.0) BS15 FUB ? N/A A8J9H7 38552612
    860547 8wa2:A (3.0) BS16 FUB ? N/A A8J9H7 38552612
    860548 8wa2:A (3.0) BS17 FUB ? N/A A8J9H7 38552612
    860549 8wa2:A (3.0) BS18 FUB ? N/A A8J9H7 38552612
    860550 8wa2:A (3.0) BS19 FUB ? N/A A8J9H7 38552612
    860551 8wa2:A (3.0) BS20 FUB ? N/A A8J9H7 38552612
    860552 8wa2:A (3.0) BS21 FUB ? N/A A8J9H7 38552612
    860553 8wa2:A (3.0) BS22 FUB ? N/A A8J9H7 38552612
    860554 8wa2:A (3.0) BS23 FUB ? N/A A8J9H7 38552612
    860555 8wa2:A (3.0) BS24 BMA ? N/A A8J9H7 38552612
    860556 8wa2:A (3.0) BS25 MAN ? N/A A8J9H7 38552612
    860557 8wa2:A (3.0) BS26 FUB ? N/A A8J9H7 38552612
    860558 8wa2:A (3.0) BS27 GZL ? N/A A8J9H7 38552612
    860559 8wa2:A (3.0) BS28 AHR ? N/A A8J9H7 38552612
    860560 8wa2:A (3.0) BS29 AHR ? N/A A8J9H7 38552612
    860561 8wa2:A (3.0) BS30 AHR ? N/A A8J9H7 38552612
    860562 8wa2:A (3.0) BS31 CA ? N/A A8J9H7 38552612
    860563 8wa2:A (3.0) BS32 GLA ? N/A A8J9H7 38552612
    860564 8wa2:A (3.0) BS33 GLA ? N/A A8J9H7 38552612
    860565 8wa2:A (3.0) BS34 GLA ? N/A A8J9H7 38552612
    860566 8wa2:A (3.0) BS35 GLA ? N/A A8J9H7 38552612
    860567 8wa2:A (3.0) BS36 GLA ? N/A A8J9H7 38552612
    860568 8wa2:A (3.0) BS37 GLA ? N/A A8J9H7 38552612
    860569 8wa2:A (3.0) BS38 GLA ? N/A A8J9H7 38552612
    860570 8wa2:A (3.0) BS39 GLA ? N/A A8J9H7 38552612
    860571 8wa2:A (3.0) BS40 GLA ? N/A A8J9H7 38552612
    860572 8wa2:A (3.0) BS41 GLA ? N/A A8J9H7 38552612
    860573 8wa2:A (3.0) BS42 GLA ? N/A A8J9H7 38552612
    860574 8wa2:B (3.0) BS01 FUB ? N/A A8J9H7 38552612
    860575 8wa2:B (3.0) BS02 FUB ? N/A A8J9H7 38552612
    860576 8wa2:B (3.0) BS03 FUB ? N/A A8J9H7 38552612
    860577 8wa2:B (3.0) BS04 FUB ? N/A A8J9H7 38552612
    860578 8wa2:B (3.0) BS05 AHR ? N/A A8J9H7 38552612
    860579 8wa2:B (3.0) BS06 FUB ? N/A A8J9H7 38552612
    860580 8wa2:B (3.0) BS07 FUB ? N/A A8J9H7 38552612
    860581 8wa2:B (3.0) BS08 FUB ? N/A A8J9H7 38552612
    860582 8wa2:B (3.0) BS09 FUB ? N/A A8J9H7 38552612
    860583 8wa2:B (3.0) BS10 FUB ? N/A A8J9H7 38552612
    860584 8wa2:B (3.0) BS11 FUB ? N/A A8J9H7 38552612
    860585 8wa2:B (3.0) BS12 FUB ? N/A A8J9H7 38552612
    860586 8wa2:B (3.0) BS13 FUB ? N/A A8J9H7 38552612
    860587 8wa2:B (3.0) BS14 FUB ? N/A A8J9H7 38552612
    860588 8wa2:B (3.0) BS15 FUB ? N/A A8J9H7 38552612
    860589 8wa2:B (3.0) BS16 FUB ? N/A A8J9H7 38552612
    860590 8wa2:B (3.0) BS17 FUB ? N/A A8J9H7 38552612
    860591 8wa2:B (3.0) BS18 FUB ? N/A A8J9H7 38552612
    860592 8wa2:B (3.0) BS19 FUB ? N/A A8J9H7 38552612
    860593 8wa2:B (3.0) BS20 FUB ? N/A A8J9H7 38552612
    860594 8wa2:B (3.0) BS21 FUB ? N/A A8J9H7 38552612
    860595 8wa2:B (3.0) BS22 FUB ? N/A A8J9H7 38552612
    860596 8wa2:B (3.0) BS23 FUB ? N/A A8J9H7 38552612
    860597 8wa2:B (3.0) BS24 FUB ? N/A A8J9H7 38552612
    860598 8wa2:B (3.0) BS25 FUB ? N/A A8J9H7 38552612
    860599 8wa2:B (3.0) BS26 FUB ? N/A A8J9H7 38552612
    860600 8wa2:B (3.0) BS27 FUB ? N/A A8J9H7 38552612
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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