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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 864790 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    860801 8wa9:A (1.5) BS02 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    860802 8wa9:A (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    860803 8wa9:B (1.5) BS01 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    860804 8wa9:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    860805 8wa9:B (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    860806 8waa:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    860807 8waa:A (1.5) BS02 3GR 2.2.1.1 GO:0000287 ... P29401 N/A
    860808 8waa:A (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    860809 8waa:A (1.5) BS04 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    860810 8waa:B (1.5) BS01 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    860811 8waa:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    860812 8waa:B (1.5) BS03 3GR 2.2.1.1 GO:0000287 ... P29401 N/A
    860813 8waa:B (1.5) BS04 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    860814 8wak:0 (5.47) BS01 ZN ? GO:0000082 ... P51948 38127763
    860815 8wak:2 (5.47) BS01 ZN ? GO:0000438 ... Q13888 38127763
    860816 8wak:2 (5.47) BS02 ZN ? GO:0000438 ... Q13888 38127763
    860817 8wak:2 (5.47) BS03 ZN ? GO:0000438 ... Q13888 38127763
    860818 8wak:3 (5.47) BS01 ZN ? GO:0000438 ... Q13889 38127763
    860819 8wak:3 (5.47) BS02 ZN ? GO:0000438 ... Q13889 38127763
    860820 8wak:6 (5.47) BS01 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860821 8wak:6 (5.47) BS02 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860822 8wak:7 (5.47) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    860823 8wak:P (5.47) BS01 dna ? GO:0000785 ... P20226 38127763
    860824 8wak:P (5.47) BS02 dna ? GO:0000785 ... P20226 38127763
    860825 8wak:Q (5.47) BS01 dna ? GO:0000979 ... P52655 38127763
    860826 8wak:R (5.47) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860827 8wak:R (5.47) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860828 8wak:R (5.47) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    860829 8wak:T (5.47) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    860830 8wak:U (5.47) BS01 ZN ? GO:0001113 ... P29083 38127763
    860831 8wak:o (5.47) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860832 8wak:o (5.47) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860833 8wak:o (5.47) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860834 8wak:o (5.47) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860835 8wak:o (5.47) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860836 8wak:o (5.47) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860837 8wak:o (5.47) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860838 8wak:p (5.47) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860839 8wak:p (5.47) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860840 8wak:p (5.47) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860841 8wak:p (5.47) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860842 8wak:q (5.47) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    860843 8wak:s (5.47) BS01 dna ? GO:0001054 ... A0A4X1VTX4 38127763
    860844 8wak:w (5.47) BS01 ZN ? GO:0000428 ... P60899 38127763
    860845 8wak:w (5.47) BS02 ZN ? GO:0000428 ... P60899 38127763
    860846 8wak:x (5.47) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    860847 8wak:z (5.47) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    860848 8wal:0 (8.52) BS01 ZN ? GO:0000082 ... P51948 38127763
    860849 8wal:2 (8.52) BS01 ZN ? GO:0000438 ... Q13888 38127763
    860850 8wal:2 (8.52) BS02 ZN ? GO:0000438 ... Q13888 38127763
    860851 8wal:2 (8.52) BS03 ZN ? GO:0000438 ... Q13888 38127763
    860852 8wal:3 (8.52) BS01 ZN ? GO:0000438 ... Q13889 38127763
    860853 8wal:3 (8.52) BS02 ZN ? GO:0000438 ... Q13889 38127763
    860854 8wal:6 (8.52) BS01 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860855 8wal:6 (8.52) BS02 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860856 8wal:7 (8.52) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    860857 8wal:P (8.52) BS01 dna ? GO:0000785 ... P20226 38127763
    860858 8wal:P (8.52) BS02 dna ? GO:0000785 ... P20226 38127763
    860859 8wal:Q (8.52) BS01 dna ? GO:0000979 ... P52655 38127763
    860860 8wal:R (8.52) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860861 8wal:R (8.52) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860862 8wal:R (8.52) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    860863 8wal:T (8.52) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    860864 8wal:U (8.52) BS01 ZN ? GO:0001113 ... P29083 38127763
    860865 8wal:o (8.52) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860866 8wal:o (8.52) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860867 8wal:o (8.52) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860868 8wal:o (8.52) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860869 8wal:o (8.52) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860870 8wal:o (8.52) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860871 8wal:p (8.52) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860872 8wal:p (8.52) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860873 8wal:p (8.52) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860874 8wal:p (8.52) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860875 8wal:q (8.52) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    860876 8wal:s (8.52) BS01 dna ? GO:0001054 ... A0A4X1VTX4 38127763
    860877 8wal:w (8.52) BS01 ZN ? GO:0000428 ... P60899 38127763
    860878 8wal:w (8.52) BS02 ZN ? GO:0000428 ... P60899 38127763
    860879 8wal:x (8.52) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    860880 8wal:z (8.52) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    860881 8wam:A (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    860882 8wam:A (3.23) BS02 MG ? GO:0005524 ... Q84TH5 38050355
    860883 8wam:A (3.23) BS03 ATP ? GO:0005524 ... Q84TH5 38050355
    860884 8wam:B (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    860885 8wam:B (3.23) BS02 ATP ? GO:0005524 ... Q84TH5 38050355
    860886 8wam:B (3.23) BS03 MG ? GO:0005524 ... Q84TH5 38050355
    860887 8wan:0 (6.07) BS01 ZN ? GO:0000082 ... P51948 38127763
    860888 8wan:2 (6.07) BS01 ZN ? GO:0000438 ... Q13888 38127763
    860889 8wan:2 (6.07) BS02 ZN ? GO:0000438 ... Q13888 38127763
    860890 8wan:2 (6.07) BS03 ZN ? GO:0000438 ... Q13888 38127763
    860891 8wan:3 (6.07) BS01 ZN ? GO:0000438 ... Q13889 38127763
    860892 8wan:3 (6.07) BS02 ZN ? GO:0000438 ... Q13889 38127763
    860893 8wan:6 (6.07) BS01 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860894 8wan:6 (6.07) BS02 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860895 8wan:7 (6.07) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    860896 8wan:P (6.07) BS01 dna ? GO:0000785 ... P20226 38127763
    860897 8wan:P (6.07) BS02 dna ? GO:0000785 ... P20226 38127763
    860898 8wan:Q (6.07) BS01 dna ? GO:0000979 ... P52655 38127763
    860899 8wan:R (6.07) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860900 8wan:R (6.07) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860901 8wan:R (6.07) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    860902 8wan:T (6.07) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    860903 8wan:U (6.07) BS01 ZN ? GO:0001113 ... P29083 38127763
    860904 8wan:o (6.07) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860905 8wan:o (6.07) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860906 8wan:o (6.07) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860907 8wan:o (6.07) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860908 8wan:o (6.07) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860909 8wan:o (6.07) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860910 8wan:p (6.07) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860911 8wan:p (6.07) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860912 8wan:p (6.07) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860913 8wan:p (6.07) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860914 8wan:q (6.07) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    860915 8wan:s (6.07) BS01 dna ? GO:0001054 ... A0A4X1VTX4 38127763
    860916 8wan:w (6.07) BS01 ZN ? GO:0000428 ... P60899 38127763
    860917 8wan:w (6.07) BS02 ZN ? GO:0000428 ... P60899 38127763
    860918 8wan:x (6.07) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    860919 8wan:z (6.07) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    860920 8wao:0 (6.4) BS01 ZN ? GO:0000082 ... P51948 38127763
    860921 8wao:2 (6.4) BS01 ZN ? GO:0000438 ... Q13888 38127763
    860922 8wao:2 (6.4) BS02 ZN ? GO:0000438 ... Q13888 38127763
    860923 8wao:2 (6.4) BS03 ZN ? GO:0000438 ... Q13888 38127763
    860924 8wao:3 (6.4) BS01 ZN ? GO:0000438 ... Q13889 38127763
    860925 8wao:3 (6.4) BS02 ZN ? GO:0000438 ... Q13889 38127763
    860926 8wao:6 (6.4) BS01 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860927 8wao:6 (6.4) BS02 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860928 8wao:7 (6.4) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    860929 8wao:P (6.4) BS01 dna ? GO:0000785 ... P20226 38127763
    860930 8wao:P (6.4) BS02 dna ? GO:0000785 ... P20226 38127763
    860931 8wao:Q (6.4) BS01 dna ? GO:0000979 ... P52655 38127763
    860932 8wao:R (6.4) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860933 8wao:R (6.4) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860934 8wao:R (6.4) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    860935 8wao:T (6.4) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    860936 8wao:U (6.4) BS01 ZN ? GO:0001113 ... P29083 38127763
    860937 8wao:o (6.4) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860938 8wao:o (6.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860939 8wao:o (6.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860940 8wao:o (6.4) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860941 8wao:o (6.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860942 8wao:o (6.4) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860943 8wao:o (6.4) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860944 8wao:p (6.4) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860945 8wao:p (6.4) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860946 8wao:p (6.4) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860947 8wao:p (6.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860948 8wao:q (6.4) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    860949 8wao:s (6.4) BS01 dna ? GO:0001054 ... A0A4X1VTX4 38127763
    860950 8wao:w (6.4) BS01 ZN ? GO:0000428 ... P60899 38127763
    860951 8wao:w (6.4) BS02 ZN ? GO:0000428 ... P60899 38127763
    860952 8wao:x (6.4) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    860953 8wao:z (6.4) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    860954 8wap:0 (5.85) BS01 ZN ? GO:0000082 ... P51948 38127763
    860955 8wap:2 (5.85) BS01 ZN ? GO:0000438 ... Q13888 38127763
    860956 8wap:2 (5.85) BS02 ZN ? GO:0000438 ... Q13888 38127763
    860957 8wap:2 (5.85) BS03 ZN ? GO:0000438 ... Q13888 38127763
    860958 8wap:3 (5.85) BS01 ZN ? GO:0000438 ... Q13889 38127763
    860959 8wap:3 (5.85) BS02 ZN ? GO:0000438 ... Q13889 38127763
    860960 8wap:6 (5.85) BS01 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860961 8wap:6 (5.85) BS02 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860962 8wap:7 (5.85) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    860963 8wap:P (5.85) BS01 dna ? GO:0000785 ... P20226 38127763
    860964 8wap:P (5.85) BS02 dna ? GO:0000785 ... P20226 38127763
    860965 8wap:Q (5.85) BS01 dna ? GO:0000979 ... P52655 38127763
    860966 8wap:R (5.85) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860967 8wap:R (5.85) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    860968 8wap:R (5.85) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    860969 8wap:T (5.85) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    860970 8wap:U (5.85) BS01 ZN ? GO:0001113 ... P29083 38127763
    860971 8wap:o (5.85) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860972 8wap:o (5.85) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860973 8wap:o (5.85) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860974 8wap:o (5.85) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860975 8wap:o (5.85) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860976 8wap:o (5.85) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860977 8wap:o (5.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    860978 8wap:p (5.85) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860979 8wap:p (5.85) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860980 8wap:p (5.85) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860981 8wap:p (5.85) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    860982 8wap:q (5.85) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    860983 8wap:s (5.85) BS01 dna ? GO:0001054 ... A0A4X1VTX4 38127763
    860984 8wap:w (5.85) BS01 ZN ? GO:0000428 ... P60899 38127763
    860985 8wap:w (5.85) BS02 ZN ? GO:0000428 ... P60899 38127763
    860986 8wap:x (5.85) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    860987 8wap:z (5.85) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    860988 8waq:0 (6.29) BS01 ZN ? GO:0000082 ... P51948 38127763
    860989 8waq:2 (6.29) BS01 ZN ? GO:0000438 ... Q13888 38127763
    860990 8waq:2 (6.29) BS02 ZN ? GO:0000438 ... Q13888 38127763
    860991 8waq:2 (6.29) BS03 ZN ? GO:0000438 ... Q13888 38127763
    860992 8waq:3 (6.29) BS01 ZN ? GO:0000438 ... Q13889 38127763
    860993 8waq:3 (6.29) BS02 ZN ? GO:0000438 ... Q13889 38127763
    860994 8waq:6 (6.29) BS01 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860995 8waq:6 (6.29) BS02 dna 3.6.4.12 GO:0000112 ... P19447 38127763
    860996 8waq:7 (6.29) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    860997 8waq:P (6.29) BS01 dna ? GO:0000785 ... P20226 38127763
    860998 8waq:P (6.29) BS02 dna ? GO:0000785 ... P20226 38127763
    860999 8waq:Q (6.29) BS01 dna ? GO:0000979 ... P52655 38127763
    861000 8waq:R (6.29) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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